Question: OpenSuse 11.4, cannot install Bioconductor due to missing C compiler
0
gravatar for Tom Bartlett
7.6 years ago by
Tom Bartlett60
Tom Bartlett60 wrote:
Hi, I'm trying to install the Bioconductor core packages (version 2.9) when using R version 2.14.1, in OpenSuse 11.4. However, the install does not complete, due to the following error message: configure: error: no acceptable C compiler found in $PATH Has anyone had the same problem, and did you find a straightforward way to fix it? Thanks in advance for your help Tom Bartlett
• 636 views
ADD COMMENTlink modified 7.6 years ago by Dan Tenenbaum8.2k • written 7.6 years ago by Tom Bartlett60
Answer: OpenSuse 11.4, cannot install Bioconductor due to missing C compiler
0
gravatar for Dan Tenenbaum
7.6 years ago by
Dan Tenenbaum8.2k
United States
Dan Tenenbaum8.2k wrote:
On Thu, Jan 19, 2012 at 5:31 AM, Tom Bartlett <thomas.bartlett.10 at="" ucl.ac.uk=""> wrote: > Hi, > > I'm trying to install the Bioconductor core packages (version 2.9) when using R version 2.14.1, in OpenSuse 11.4. However, the install does not complete, due to the following error message: configure: error: no acceptable C compiler found in $PATH > > Has anyone had the same problem, and did you find a straightforward way to fix it? > > Thanks in advance for your help A comprehensive list of ubuntu packages required for building R, courtesy of Hervé Pagès; use "apt-get install pkg1 pkg2 ... pkgN": Required stuff: make libc6-dev gfortran gfortran-4.2 g++ g++-4.2 libreadline5-dev libx11-dev libxt-dev Other highly recommended stuff (TeX/LaTeX, tcltk, PNG, JPEG, cairo, Java): texlive-full tcl8.5-dev tk8.5-dev libxss-dev libpng12-dev libjpeg62-dev libcairo2-dev gcj gcj-4.2 Required by some CRAN or Bioconductor packages: libcurl4-openssl-dev (for RCurl) libxml2-dev (for XML) libgtk2.0-dev, libglade2.0-dev (for RGtk2) libgraphviz-dev (for Rgraphviz) ggobi (for rggobi) Really nice to have: manpages-dev colorgcc (to activate this: cd /usr/local/bin/ && sudo ln -s /usr/bin/colorgcc gcc) Dan > > Tom Bartlett > _______________________________________________ > Bioconductor mailing list > Bioconductor at r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor
ADD COMMENTlink written 7.6 years ago by Dan Tenenbaum8.2k
Answer: OpenSuse 11.4, cannot install Bioconductor due to missing C compiler
0
gravatar for David Lapointe
7.6 years ago by
David Lapointe170 wrote:
Well, it sounds like you don't have the compilers and/or devel packages loaded. Go into your package manager for openSUSE and make sure the compilers are checked ( C/Fortran) as well as the basic devel libraries. If not then install them. David -----Original Message----- From: bioconductor-bounces@r-project.org [mailto:bioconductor- bounces@r-project.org] On Behalf Of Tom Bartlett Sent: Thursday, January 19, 2012 8:31 AM To: bioconductor at r-project.org Subject: [BioC] OpenSuse 11.4, cannot install Bioconductor due to missing C compiler Hi, I'm trying to install the Bioconductor core packages (version 2.9) when using R version 2.14.1, in OpenSuse 11.4. However, the install does not complete, due to the following error message: configure: error: no acceptable C compiler found in $PATH Has anyone had the same problem, and did you find a straightforward way to fix it? Thanks in advance for your help Tom Bartlett _______________________________________________ Bioconductor mailing list Bioconductor at r-project.org https://stat.ethz.ch/mailman/listinfo/bioconductor Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor
ADD COMMENTlink written 7.6 years ago by David Lapointe170
Hi Tom You may also need a package named curl-devel. In Fedora, curl-devel is not installed by default; I do not know about OpenSuse. Ivan Ivan Gregoretti, PhD On Thu, Jan 19, 2012 at 8:39 AM, Lapointe, David <david.lapointe at="" umassmed.edu=""> wrote: > Well, it sounds like you don't have the compilers and/or devel packages loaded. Go into your package manager for openSUSE and make sure the compilers are checked ( C/Fortran) as well as the basic devel libraries. If not then install them. > > David > > -----Original Message----- > From: bioconductor-bounces at r-project.org [mailto:bioconductor- bounces at r-project.org] On Behalf Of Tom Bartlett > Sent: Thursday, January 19, 2012 8:31 AM > To: bioconductor at r-project.org > Subject: [BioC] OpenSuse 11.4, cannot install Bioconductor due to missing C compiler > > Hi, > > I'm trying to install the Bioconductor core packages (version 2.9) when using R version 2.14.1, in OpenSuse 11.4. However, the install does not complete, due to the following error message: configure: error: no acceptable C compiler found in $PATH > > Has anyone had the same problem, and did you find a straightforward way to fix it? > > Thanks in advance for your help > > Tom Bartlett > _______________________________________________ > Bioconductor mailing list > Bioconductor at r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor > > _______________________________________________ > Bioconductor mailing list > Bioconductor at r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor
ADD REPLYlink written 7.6 years ago by Ivan Gregoretti310
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 113 users visited in the last hour