Question: Problem using KEGGSOAP: multiple genes per identity
0
gravatar for January Weiner
7.8 years ago by
European Union
January Weiner240 wrote:
Dear all, I have hit a wall when trying to get KEGG pathway maps colored by gene expression. On several of these, an entity on the map corresponds to several genes. I assume that the entity corresponds to one kegg orthology ID (at least that is what I observe in the pathways that I use). Now I face the following problem: KEGG API does not seem to have a consistent behavior when multiple genes with different colors are submitted to the color_pathway_by_objects. One way would be to use the get_elements_by_pathway SOAP call, since it returns a mapping between the graphical elements of a pathway and the genes in question. However, this does not seem to be implemented in KEGGSOAP. What do you do in such a case? Kind regards, j. --
pathways keggsoap • 636 views
ADD COMMENTlink written 7.8 years ago by January Weiner240
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 245 users visited in the last hour