Entering edit mode
Luz Mayela Soto
▴
10
@luz-mayela-soto-5285
Last seen 10.3 years ago
Dear all,
I'm trying to do some clustering analysis in a microarray expression
data
set, for that I was trying to implement the adSplit package. Even when
running the example in the vignette, when trying to use the
diana2means( )
function I get an error:
> library(golubEsets)
> data(Golub_Merge)
> e <- exprs(Golub_Merge)
> vars <- apply(e, 1, var)
> e <- e[vars > quantile(vars,0.9),]
>
> diana2means(e)
Error in .C(twins, n, jp, as.double(x2), dv, dis = double(if
(C.keep.diss)
length(dv) else 1), :
'name' must be a string (of length 1) or native symbol reference
Could anyone point me to the right direction on to how to fix this?
My session information:
R version 2.15.0 (2012-03-30)
Platform: i386-pc-mingw32/i386 (32-bit)
locale:
[1] LC_COLLATE=English_United Kingdom.1252 LC_CTYPE=English_United
Kingdom.1252
[3] LC_MONETARY=English_United Kingdom.1252
LC_NUMERIC=C
[5] LC_TIME=English_United Kingdom.1252
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] chicken.db_2.7.1 org.Gg.eg.db_2.7.1 golubEsets_1.4.11
adSplit_1.26.0 BiocInstaller_1.4.4
[6] UsingR_0.1-18 MASS_7.3-18 SpeCond_1.10.0
RColorBrewer_1.0-5 hwriter_1.3
[11] fields_6.6.3 spam_0.29-1 mclust_3.4.11
hgu133a2.db_2.7.1 org.Hs.eg.db_2.7.1
[16] annaffy_1.28.0 KEGG.db_2.7.1 GO.db_2.7.1
RSQLite_0.11.1 DBI_0.2-5
[21] AnnotationDbi_1.18.0 genefilter_1.38.0 limma_3.12.0
affy_1.34.0 Biobase_2.16.0
[26] IRanges_1.14.3 BiocGenerics_0.2.0
loaded via a namespace (and not attached):
[1] affyio_1.24.0 annotate_1.34.0 cluster_1.14.2
multtest_2.12.0 preprocessCore_1.18.0
[6] splines_2.15.0 stats4_2.15.0 survival_2.36-14
tools_2.15.0 xtable_1.7-0
[11] zlibbioc_1.2.0
Kind regards,
Mayela Soto
Licenciatura en Ciencias Genomicas
UNAM
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