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Last seen 9.6 years ago
Greetings,
I'm working my way through the tutorials for several RNA-Seq packages
in R / bioconductor (EdgeR, DESeq, DEXSeq, ShortReads, etc.); and I've
somewhat backed up to using the package RnaSeqTutorial (EBI, October
2011; Nicolas Delhomme).
As I work my way through the documentation I stumble at section 2.3
Loading the annotation.
it provides,
> library(BSgenome.Dmelanogaster.UCSC.dm3)
and I get the error message: Error in
library(BSgenome.Dmelanogaster.UCSC.dm3); there is no package called
'BSgenome.Dmelanogaster.UCSC.dm3'
is the above a typo? and should it read something to the effect of
>library(BSgenome)
>Dmelano <- data(Dmelanogaster.UCSC.dm3, package = "BSgenome")
Or is it that BSgenome is built under a different version of R? I have
downloaded the source package and can locate said
"Dmelanogaster.UCSC.dm3-seed"
I can't seem to work my way through this step. Any suggestions?
Thanks in advance.
-- output of sessionInfo():
> library(BSgenome.Dmelanogaster.UCSC.dm3)
Error in library(BSgenome.Dmelanogaster.UCSC.dm3); there is no package
called 'BSgenome.Dmelanogaster.UCSC.dm3'
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