Question: RnaSeqTutorial Package
7.3 years ago by
Guest User • 12k
Guest User • 12k wrote:
Greetings, I'm working my way through the tutorials for several RNA-Seq packages in R / bioconductor (EdgeR, DESeq, DEXSeq, ShortReads, etc.); and I've somewhat backed up to using the package RnaSeqTutorial (EBI, October 2011; Nicolas Delhomme). As I work my way through the documentation I stumble at section 2.3 Loading the annotation. it provides, > library(BSgenome.Dmelanogaster.UCSC.dm3) and I get the error message: Error in library(BSgenome.Dmelanogaster.UCSC.dm3); there is no package called 'BSgenome.Dmelanogaster.UCSC.dm3' is the above a typo? and should it read something to the effect of >library(BSgenome) >Dmelano <- data(Dmelanogaster.UCSC.dm3, package = "BSgenome") Or is it that BSgenome is built under a different version of R? I have downloaded the source package and can locate said "Dmelanogaster.UCSC.dm3-seed" I can't seem to work my way through this step. Any suggestions? Thanks in advance. -- output of sessionInfo(): > library(BSgenome.Dmelanogaster.UCSC.dm3) Error in library(BSgenome.Dmelanogaster.UCSC.dm3); there is no package called 'BSgenome.Dmelanogaster.UCSC.dm3' -- Sent via the guest posting facility at bioconductor.org.
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