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@akula-nirmala-nihnimh-c-5007
Last seen 5.3 years ago
Hi,
Using the python scripts provided in DEXSeq package
dexseq_prepare_annotation.py and dexseq_count.py) I obtained the
ensemble.gff and exon counts per sample. Here's a table of the counts:
case
case
case
case
control
control
control
control
control
ENSG00000000003:001
135
173
248
262
193
213
132
207
156
ENSG00000000003:002
119
78
199
156
156
121
100
162
120
ENSG00000000003:003
90
83
156
95
109
128
62
127
111
ENSG00000000003:004
48
34
74
55
35
73
26
59
46
ENSG00000000003:005
24
13
30
33
23
35
23
27
26
ENSG00000000003:006
17
12
27
30
33
21
16
22
6
ENSG00000000003:007
51
43
83
65
77
76
21
91
51
Is there a way to import this table into DEXSeq and find the
differentially expressed exons?
Thank you very much.
Regards,
Nirmala
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