That should be an easy fix. But I will have to check the code, it's a long time since I wrote it. But overview is a really simple wrapper function that plots a dendrogram, boxplot and histogram. I an traveling currently. I will look at this ASAP Aedin --- On Jul 3, 2012, at 16:39, Martin Morgan <mtmorgan at="" fhcrc.org=""> wrote: > On 07/02/2012 08:30 AM, Anja Rockstroh wrote: >> Hello Aedin, >> >> I noticed that the default colours the overview function of the made4 >> package is using is the 21 colour palette of getcol. However, I was >> wondering whether this can be changed to custom colours? I have tried >> to include arraycol or cols into the overview function, but I always >> get the "unused arguments" error message. I am sorry if this is a >> stupid question, I am still very new to R and it might just be a >> typing error on my side. Could you please give me an example command >> line? > > Usually best to cc the packageDescription("made4")$Maintainer in posts, as they are in the best position to help. From looking at the code and man page I would guess that it hasn't been written to support choice of colors that deviate from the maintainer's favorites. > > Martin > > >> >> Thanks very much in advance for your help, it is much appreciated. >> >> Best regards, Anja >> >> Anja Rockstroh | Research Fellow | Australian Prostate Cancer >> Research Centre - Queensland | Institute of Health and Biomedical >> Innovation | Queensland University of Technology / QUT | Office: >> Level 1 Building 33 | Lab: Level 2 R-wing |Princess Alexandra >> Hospital | 199 Ipswich Rd | Brisbane QLD 4102 Australia | Lab phone: >> 07 3176 5491 | Office phone: 07 3176 3074 | fax: 07 3176 7440 | >> email: anja.rockstroh at qut.edu.au >> >> >> [[alternative HTML version deleted]] >> >> _______________________________________________ Bioconductor mailing >> list Bioconductor at r-project.org >> https://stat.ethz.ch/mailman/listinfo/bioconductor Search the >> archives: >> http://news.gmane.org/gmane.science.biology.informatics.conductor > > > -- > Computational Biology / Fred Hutchinson Cancer Research Center > 1100 Fairview Ave. N. > PO Box 19024 Seattle, WA 98109 > > Location: Arnold Building M1 B861 > Phone: (206) 667-2793