Hi - I would like to request that a BSGenome package be generated with the latest release of the dog genome (canfam3.1). The BSgenome.Cfamiliaris.UCSC.canFam2 package has been terrifically helpful. I am emailing this list based on the information here ( http://www.bioconductor.org/packages/release/data/annotation/ ), but if I should ask elsewhere, please let me know. Thank you, Holly

Hi Holly, I've just rolled up a BSgenome package for canFam3. I'm about to push it to BioC devel and it will become available via biocLite() in the next hour or so. See here http://bioconductor.org/developers/useDevel/ for how to use the devel version of Bioconductor. Note that for the moment only the source tarball will be available which means that Windows and Mac users will need to install with biocLite("BSgenome.Cfamiliaris.UCSC.canFam3", type="source") Please let me know if you run into any issue with this. Cheers, H. On 07/24/2012 02:54 PM, holly beale wrote: > Hi - > > I would like to request that a BSGenome package be generated with the > latest release of the dog genome (canfam3.1). The > BSgenome.Cfamiliaris.UCSC.canFam2 package has been terrifically > helpful. I am emailing this list based on the information here ( > http://www.bioconductor.org/packages/release/data/annotation/ ), but > if I should ask elsewhere, please let me know. > > Thank you, > Holly > > _______________________________________________ > Bioconductor mailing list > Bioconductor at r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor > -- Hervé Pagès Program in Computational Biology Division of Public Health Sciences Fred Hutchinson Cancer Research Center 1100 Fairview Ave. N, M1-B514 P.O. Box 19024 Seattle, WA 98109-1024 E-mail: hpages at fhcrc.org Phone: (206) 667-5791 Fax: (206) 667-1319