Question: edgeR- data for case studies
0
gravatar for Gordon Smyth
7.0 years ago by
Gordon Smyth37k
Walter and Eliza Hall Institute of Medical Research, Melbourne, Australia
Gordon Smyth37k wrote:
Dear Franklin, You don't say what version of edgeR you are using, but the latest version of the User's Guide http://bioconductor.org/packages/2.11/bioc/vignettes/edgeR/inst/doc/ed geRUsersGuide.pdf explains explicitly how to get every dataset for yourself. The source of the dataset is explained at the start of every case study. You have to download these datasets for yourself. We don't ship them with the edgeR package. Best wishes Gordon > Date: Sun, 29 Jul 2012 19:15:27 +0000 > From: "Johnson, Franklin Theodore" <franklin.johnson at="" email.wsu.edu=""> > To: "bioconductor at stat.math.ethz.ch" <bioconductor at="" stat.math.ethz.ch=""> > Subject: [BioC] edgeR- data for case studies > > Hello, > > I am trying to repeat the edgeR process for section 3.3, 3.4 and 3.5 of > the edgeR user guide. > > However, in the edgeR data folder, labeled 'data', there are only four > .txt files. These .txt files are used to implement edgeR analysis the > SAGE experiment for sections 3.1 and 3.2 only. > > Is it possible to receive the data files used to develop the case > studies for sections 3.3, 3.4 and 3.4? > > Regards, > Franklin > ______________________________________________________________________ The information in this email is confidential and intend...{{dropped:4}}
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ADD COMMENTlink modified 7.0 years ago by Johnson, Franklin Theodore140 • written 7.0 years ago by Gordon Smyth37k
Answer: edgeR- data for case studies
0
gravatar for Johnson, Franklin Theodore
7.0 years ago by
Dear Gordan, Ok Thanks. I guess I just wanted to make sure I trimmed the data properly when specified. Regards, Franklin ________________________________________ From: Gordon K Smyth [smyth@wehi.EDU.AU] Sent: Tuesday, July 31, 2012 6:19 PM To: Johnson, Franklin Theodore Cc: Bioconductor mailing list Subject: edgeR- data for case studies Dear Franklin, You don't say what version of edgeR you are using, but the latest version of the User's Guide http://bioconductor.org/packages/2.11/bioc/vignettes/edgeR/inst/doc/ed geRUsersGuide.pdf explains explicitly how to get every dataset for yourself. The source of the dataset is explained at the start of every case study. You have to download these datasets for yourself. We don't ship them with the edgeR package. Best wishes Gordon > Date: Sun, 29 Jul 2012 19:15:27 +0000 > From: "Johnson, Franklin Theodore" <franklin.johnson at="" email.wsu.edu=""> > To: "bioconductor at stat.math.ethz.ch" <bioconductor at="" stat.math.ethz.ch=""> > Subject: [BioC] edgeR- data for case studies > > Hello, > > I am trying to repeat the edgeR process for section 3.3, 3.4 and 3.5 of > the edgeR user guide. > > However, in the edgeR data folder, labeled 'data', there are only four > .txt files. These .txt files are used to implement edgeR analysis the > SAGE experiment for sections 3.1 and 3.2 only. > > Is it possible to receive the data files used to develop the case > studies for sections 3.3, 3.4 and 3.4? > > Regards, > Franklin > ______________________________________________________________________ The information in this email is confidential and intend...{{dropped:6}}
ADD COMMENTlink written 7.0 years ago by Johnson, Franklin Theodore140
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