Hi, Do you have any ideas? I have converted gene names many times, but still does not fit, same problem... -- output of sessionInfo(): Loading hg19 length data... Error in getlength(names(DEgenes), genome, id) : The gene names specified do not match the gene names for genome hg19 and ID knownGene. Gene names given were: uc002qsf.2, uc002qse.3, uc009xov.3, uc021rmd.1, uc001qvk.1, uc010sgm.2, uc021qum.1, uc010gzd.3, uc003ers.2, uc002hhv.3 Required gene names are: NA, NA, NA, 653635, 653635, 653635, 653635, 653635, 653635, 653635 -- Sent via the guest posting facility at bioconductor.org.

Seems like you might have some luck if you convert your gene id's to entrez id's On Sunday, October 7, 2012, Michael [guest] wrote: > > Hi, > > Do you have any ideas? > I have converted gene names many times, but still does not fit, same > problem... > > -- output of sessionInfo(): > > > Loading hg19 length data... > Error in getlength(names(DEgenes), genome, id) : > The gene names specified do not match the gene names for genome hg19 and > ID knownGene. > Gene names given were: uc002qsf.2, uc002qse.3, uc009xov.3, > uc021rmd.1, uc001qvk.1, uc010sgm.2, uc021qum.1, uc010gzd.3, uc003ers.2, > uc002hhv.3 > Required gene names are: NA, NA, NA, 653635, 653635, 653635, > 653635, 653635, 653635, 653635 > > -- > Sent via the guest posting facility at bioconductor.org. > > _______________________________________________ > Bioconductor mailing list > Bioconductor@r-project.org <javascript:;> > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: > http://news.gmane.org/gmane.science.biology.informatics.conductor > -- Steve Lianoglou Graduate Student: Computational Systems Biology | Memorial Sloan-Kettering Cancer Center | Weill Medical College of Cornell University Contact Info: http://cbio.mskcc.org/~lianos/contact [[alternative HTML version deleted]]