Question: Regarding CDF & annotation package
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gravatar for Gnanakkumaar P
7.1 years ago by
Gnanakkumaar P10 wrote:
Dear Sir/Madam, I am using affylmgui package for microarray data analysis I am using following two chip set data. I am very thankful if you could help with annotation package. GPL96 [HG-U133A] Affymetrix Human Genome U133A Array GPL7020_NuGO_Hs1a520180 Thank you very much.. -- With Regards, P.Gnanakkumaar [[alternative HTML version deleted]]
ADD COMMENTlink modified 7.1 years ago by Guido Hooiveld2.5k • written 7.1 years ago by Gnanakkumaar P10
Answer: Regarding CDF & annotation package
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gravatar for Guido Hooiveld
7.1 years ago by
Guido Hooiveld2.5k
Wageningen University, Wageningen, the Netherlands
Guido Hooiveld2.5k wrote:
Hi, You can find annotation packages for both array types at the annotation page of BioC: http://www.bioconductor.org/packages/release/BiocViews.html#___Annotat ionData Look for "hgu133a.db" (Affymetrix Human Genome U133 Set annotation data (chip hgu133a)) and "nugohs1a520180.db" (Affymetrix nugohs1a520180 annotation data (chip nugohs1a520180)). Regards, Guido --------------------------------------------------------- Guido Hooiveld, PhD Nutrition, Metabolism & Genomics Group Division of Human Nutrition Wageningen University Biotechnion, Bomenweg 2 NL-6703 HD Wageningen the Netherlands tel: (+)31 317 485788 fax: (+)31 317 483342 email: guido.hooiveld at wur.nl internet: http://nutrigene.4t.com http://scholar.google.com/citations?user=qFHaMnoAAAAJ http://www.researcherid.com/rid/F-4912-2010 -----Original Message----- From: bioconductor-bounces@r-project.org [mailto:bioconductor- bounces@r-project.org] On Behalf Of Gnanakkumaar P Sent: Saturday, October 20, 2012 08:26 To: bioconductor at stat.math.ethz.ch Subject: [BioC] Regarding CDF & annotation package Dear Sir/Madam, I am using affylmgui package for microarray data analysis I am using following two chip set data. I am very thankful if you could help with annotation package. GPL96 [HG-U133A] Affymetrix Human Genome U133A Array GPL7020_NuGO_Hs1a520180 Thank you very much.. -- With Regards, P.Gnanakkumaar [[alternative HTML version deleted]] _______________________________________________ Bioconductor mailing list Bioconductor at r-project.org https://stat.ethz.ch/mailman/listinfo/bioconductor Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor
ADD COMMENTlink written 7.1 years ago by Guido Hooiveld2.5k
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