Hi, I am trying to load the development version of the affy package and i get the following error. I am using R 1.6.1 on RH linux 8.0. Any I deas? Nicholas library(affy) ************* affy: development version ************* The package is under major changes. unpack the package and read the file NEWS to know more.... The draft for the new vignette (called 'affy2') is distributed with the pacakge ************* demo(affy.tour) will eventually work and give an overview... ************* Loading required package: methods Expanding the signature to include omitted arguments in definition: j = "missing" Attaching package `Biobase': The following object(s) are masked from package:base : split -->detecting normalization methods from naming convention -->detecting expression value methods from naming convention -->detecting background correction methods from naming convention -->detecting pm correction methods from naming convention -->initCdf -->initCel -->initAffyBatch Error in getClass(Class) : "MIAME" is not a defined class Error in library(affy) : .First.lib failed

I think you need the development version of Biobase. best, -tony >>>>> "nicholas" == Nicholas Lewin-Koh <nikko@hailmail.net> writes: nicholas> Hi, nicholas> I am trying to load the development version of the affy package and i nicholas> get the following error. I am using R 1.6.1 on RH linux 8.0. Any I deas? nicholas> Nicholas nicholas> library(affy) nicholas> ************* nicholas> affy: development version nicholas> ************* nicholas> The package is under major changes. nicholas> unpack the package and read the file NEWS to know more.... nicholas> The draft for the new vignette (called 'affy2') is distributed with the nicholas> pacakge nicholas> ************* nicholas> demo(affy.tour) will eventually work and give an overview... nicholas> ************* nicholas> Loading required package: methods nicholas> Expanding the signature to include omitted arguments nicholas> in definition: j = "missing" nicholas> Attaching package `Biobase': nicholas> The following object(s) are masked from package:base : nicholas> split --> detecting normalization methods from naming convention --> detecting expression value methods from naming convention --> detecting background correction methods from naming convention --> detecting pm correction methods from naming convention --> initCdf --> initCel --> initAffyBatch nicholas> Error in getClass(Class) : "MIAME" is not a defined class nicholas> Error in library(affy) : .First.lib failed nicholas> _______________________________________________ nicholas> Bioconductor mailing list nicholas> Bioconductor@stat.math.ethz.ch nicholas> http://www.stat.math.ethz.ch/mailman/listinfo/bioconductor -- A.J. Rossini Rsrch. Asst. Prof. of Biostatistics U. of Washington Biostatistics rossini@u.washington.edu FHCRC/SCHARP/HIV Vaccine Trials Net rossini@scharp.org -------------- http://software.biostat.washington.edu/ ---------------- FHCRC: M: 206-667-7025 (fax=4812)|Voicemail is pretty sketchy/use Email UW: Th: 206-543-1044 (fax=3286)|Change last 4 digits of phone to FAX (my tuesday/wednesday/friday locations are completely unpredictable.)

you need the latest Biobase and tkWidgets. On Wed, 6 Nov 2002, Nicholas Lewin-Koh wrote: > Hi, > I am trying to load the development version of the affy package and i > get the following error. I am using R 1.6.1 on RH linux 8.0. Any I deas? > > Nicholas > > > library(affy) > ************* > affy: development version > ************* > The package is under major changes. > unpack the package and read the file NEWS to know more.... > The draft for the new vignette (called 'affy2') is distributed with the > pacakge > ************* > demo(affy.tour) will eventually work and give an overview... > ************* > Loading required package: methods > Expanding the signature to include omitted arguments > in definition: j = "missing" > > Attaching package `Biobase': > > > The following object(s) are masked from package:base : > > split > > -->detecting normalization methods from naming convention > -->detecting expression value methods from naming convention > -->detecting background correction methods from naming convention > -->detecting pm correction methods from naming convention > -->initCdf > -->initCel > -->initAffyBatch > Error in getClass(Class) : "MIAME" is not a defined class > Error in library(affy) : .First.lib failed > > > > > _______________________________________________ > Bioconductor mailing list > Bioconductor@stat.math.ethz.ch > http://www.stat.math.ethz.ch/mailman/listinfo/bioconductor >