Hi all, I am new to Bioconductor and in need of guidance. I am looking for a workflow(s) for analyzing Agilent 2 color aCGH. Thank you all very much in advance. Cole McQueen VLCS Graduate Student cmcqueen@cvm.tamu.edu<mailto:cmcqueen@cvm.tamu.edu> 979-450-0717 [[alternative HTML version deleted]]

Hi, On Tue, Nov 20, 2012 at 7:50 AM, McQueen, Cole <cmcqueen at="" cvm.tamu.edu=""> wrote: > Hi all, > I am new to Bioconductor and in need of guidance. I am looking for a workflow(s) for analyzing Agilent 2 color aCGH. Thank you all very much in advance. I think you'll find that a google search for "agilent acgh bioconductor" and "bioconductor acgh workflow" to be quite fruitful. ;-) There is at least one publication that deals with this expressly: Analysis of Array-CGH Data Using the R and Bioconductor Software Suite http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2728899/ You'll also find many packages that pop up (such as snapCGH, just to name one) which also have their own vignettes that act as tutorials on how to use them, so I guess you will be in pretty good shape. -steve -- Steve Lianoglou Graduate Student: Computational Systems Biology | Memorial Sloan-Kettering Cancer Center | Weill Medical College of Cornell University Contact Info: http://cbio.mskcc.org/~lianos/contact