Hi Dan, Here is what I entered after I started "R": > source("http://bioconductor.org/biocLite.R") > biocLite("DESeq") Using R version 2.10.1, biocinstall version 2.5.11. Installing Bioconductor version 2.5 packages: [1] "DESeq" Please wait... Warning message: In getDependencies(pkgs, dependencies, available, lib) : package 'DESeq' is not available > Thanks. Fares Dan Tenenbaum wrote: > On Wed, Jan 9, 2013 at 7:42 AM, Fares Z. Najar, Ph.D. <fznajar at="" ou.edu=""> wrote: >> Hi all, >> >> I am trying to install DESeq package. According to the website instructions >> ("http://bioconductor.org/packages/2.11/bioc/html/DESeq.html")S. tarting >> from "R", I get the message: >> >> Warning message: >> In getDependencies(pkgs, dependencies, available, lib) : >> package 'DESeq' is not available >> >> Was there something I should have done before? >> > > Can you post > 1) The commands you are tying that cause the error. > 2) The output of sessionInfo() > 3) The output of biocinstallRepos() > > Thanks, > Dan > > >> Best, >> Fares >> >> -- >> ----------------------------------------------- >> Fares Z. Najar, Ph.D. >> Research Scientist >> Chemistry and Biochemistry >> Advanced Center for Genome Technology (ACGT) >> Stephenson Research and Technology Center >> 101 David L. Boren Blvd. Room 2170 >> Norman, OK 73019 >> >> Phone: 405-325-4912 >> Fax: 405-325-7762 >> E-mail: fznajar at ou.edu >> >> _______________________________________________ >> Bioconductor mailing list >> Bioconductor at r-project.org >> https://stat.ethz.ch/mailman/listinfo/bioconductor >> Search the archives: >> http://news.gmane.org/gmane.science.biology.informatics.conductor -- ----------------------------------------------- Fares Z. Najar, Ph.D. Research Scientist Chemistry and Biochemistry Advanced Center for Genome Technology (ACGT) Stephenson Research and Technology Center 101 David L. Boren Blvd. Room 2170 Norman, OK 73019 Phone: 405-325-4912 Fax: 405-325-7762 E-mail: fznajar at ou.edu