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@guest-user-4897
Last seen 9.6 years ago
Hello,
I've been using topGO to run enrichment analysis for gene sets and
have used the showSigOfNodes command to make GO graphs of the enriched
terms. Since the newest Bioconductor release in October, the text in
the nodes of the GO graph has been unreadable. I have tried increasing
the size of the picture, but that doesn't increase the resolution at
all. Previously the graphs have looked just fine and this problem has
occured after updating to the newest Bioconductor version. Any
suggestions on how to fix this problem?
Best regards,
Sini
-- output of sessionInfo():
> sessionInfo()
R version 2.15.1 (2012-06-22)
Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit)
locale:
[1] en_GB.UTF-8/en_GB.UTF-8/en_GB.UTF-8/C/en_GB.UTF-8/en_GB.UTF-8
attached base packages:
[1] grid stats graphics grDevices utils datasets
methods base
other attached packages:
[1] Rgraphviz_2.2.1 org.Hs.eg.db_2.8.0 KEGG.db_2.8.0
GOstats_2.24.0
[5] Category_2.24.0 topGO_2.10.0 SparseM_0.96
GO.db_2.8.0
[9] RSQLite_0.11.2 DBI_0.2-5 AnnotationDbi_1.20.3
Biobase_2.18.0
[13] BiocGenerics_0.4.0 graph_1.36.1
loaded via a namespace (and not attached):
[1] annotate_1.36.0 AnnotationForge_1.0.3 genefilter_1.40.0
GSEABase_1.20.1
[5] IRanges_1.16.4 lattice_0.20-13 parallel_2.15.1
RBGL_1.34.0
[9] splines_2.15.1 stats4_2.15.1 survival_2.37-2
tools_2.15.1
[13] XML_3.95-0.1 xtable_1.7-0
--
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