Hi, I'm having diffculty reading in a complete data set. My fcs files are among others in my working directory. I can read them in one by one, but then i have to give the argument emptyValue=FALSE. So that works. I want to read them all in at once (to make comparison more easy), so i used read.flowSet. > flowDataSet <- read.flowSet(files="XXXX.XX.X.0001.fcs", transformation=FALSE, emptyValue =FALSE) And this the error i got. Error in fcs_text_parse(txt, emptyValue = emptyValue) : No end found There could be double delimiter existing in keyword value. Please set argument 'emptyValue' as FALSE and try again! Any help.? currently i'm using the files thing as a test case, but i guess, i just have to change that to path=".", to read in all .fcs at once? [[alternative HTML version deleted]]

Pieter, It is a bug. I've fixed it in flowCore 1.24.1,which should appear at BioC by tomorrow afternoon. Mike

Correct! Mike On 01/30/2013 10:53 AM, Pieter Coussement wrote: > Super! > So that would mean that I can just put the emptyValue argument as an > argument with read.flowSet? > (sorry just starting to get my grips on R). > > Best regards, > Pieter > > On wo 30 jan 2013 19:50:38 CET, Mike wrote: >> Pieter, >> >> It is a bug. I've fixed it in flowCore 1.24.1,which should appear at >> BioC by tomorrow afternoon. >> >> Mike