Thanks James, reinstalling fixed it. It's curious, though, because I had the problem both on my initial install and after I upgraded to the newest version at WEHI. Paul > -----Original Message----- > From: James Wettenhall [mailto:wettenhall@wehi.edu.au] > Sent: Monday, June 21, 2004 10:29 PM > To: paul.boutros@utoronto.ca > Cc: BioConductor Mailing List > Subject: Re: [BioC] Error in parse() loading affylmGUI > > > Hi Paul, > > I'm running R 1.9.0, limma 1.6.14 and affylmGUI 1.1.0 without > problems on Windows 2000/NT. Can I suggest reinstalling limma > and affylmGUI with: > install.packages("limma",contriburl="http://bioinf.wehi.edu.au/limma") > install.packages("affylmGUI",contriburl="http://bioinf.wehi.edu.au > /affylmGUI") > > after checking that .libPaths() is set appropriately. > > Maybe you got a corrupt download last time. > > > When I load the library and start the interface I get an > error-box popping up > > saying: > > Error in parse(file,n,text,prompt): parse error > > Do you have any files in the etc/ subdirectory of affylmGUI with > extension .R ? affylmGUI sources these .R files automatcially > when it starts so that they can be used as custom menu items. > > Please use the correct capitalization: > library(affylmGUI) > > instead of library(affylmgui) > > Hope this helps, > James > > > > > > And nothing suspicous appears in the console: > > > library(affylmgui); > > Loading required package: limma > > Loading required package: affy > > Welcome to Bioconductor > > Vignettes contain introductory material. To view, > > simply type: openVignette() > > For details on reading vignettes, see > > the openVignette help page. > > Loading required package: tcltk > > Warning message: > > Package 'affylmgui' not found. > > Using case-insensitive match 'affylmGUI' . > > Future versions of R will require exact matches. > > > > ActiveTcl was found in the Windows Registry (for > LOCAL_MACHINE), installed in > > E:\tcl > > This directory will be added to the Tcl search path to enable affylmGUI > > to find the Tktable and BWidget extensions. > > > > To begin, type affylmGUI() or use the pull-down menu. > > > > Searching for user-defined affylmGUI commands in > > C:/PROGRA~1/R/rw1090/library/affylmGUI/etc ... > > > > Any suggestions? > > Paul > > > > _______________________________________________ > > Bioconductor mailing list > > Bioconductor@stat.math.ethz.ch > > https://www.stat.math.ethz.ch/mailman/listinfo/bioconductor > > > >