Entering edit mode
Thomas Rensch
▴
20
@thomas-rensch-5791
Last seen 10.1 years ago
Hi everyone,
I am reading and writing fastq files and writeFastq just swaps dots
('.') for dashes ('-').
Is this the desired behaviour of writeFastq and if so why? Otherwise
could someone better at R development than I modify this?
Example fastq:
@HWI-EAS149_3:1:1:0:1956:0:1:0
.A..................................
+
BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
@HWI-EAS149_3:1:1:0:173:0:1:0
.T..................................
+
BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
@HWI-EAS149_3:1:1:0:47:0:1:0
.T..................................
+
BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
Thanks a lot,
Thomas
--
Thomas Rensch
PhD Student - Paul Flicek Group
EMBL-EBI