Expected value of finding a sequence
0
0
Entering edit mode
Tim Smith ★ 1.1k
@tim-smith-1532
Last seen 7.9 years ago
Hi, I was looking to find a package/function that would calculate the expected value/frequency of finding a subsequence, within a sequence of length L. For example, assuming that all nucleotides are equally probable, how many times would we expect to find the pattern 'ATTG' in a sequence of length = 20. I tried looking in biostrings and IRanges, but didn't find what I was looking for. many thanks! [[alternative HTML version deleted]]
Biostrings IRanges Biostrings IRanges • 504 views
ADD COMMENT

Login before adding your answer.

Traffic: 182 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6