Question: Expected value of finding a sequence
gravatar for Tim Smith
6.2 years ago by
Tim Smith1.1k
Tim Smith1.1k wrote:
Hi, I was looking to find a package/function that would calculate the expected value/frequency of finding a subsequence, within a sequence of length L. For example, assuming that all nucleotides are equally probable, how many times would we expect to find the pattern 'ATTG' in a sequence of length = 20. I tried looking in biostrings and IRanges, but didn't find what I was looking for. many thanks! [[alternative HTML version deleted]]
biostrings iranges • 380 views
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