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Question: installing Rdisop
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5.4 years ago by
Guest User12k
Guest User12k wrote:
Hello, I am trying to install Rdisop but got the following error which I thought meant the package was looking for older version of Rcpp that is not there anymore. Anyone knows how to fix this? Thank you. > source("http://bioconductor.org/biocLite.R") > biocLite("Rdisop") BioC_mirror: http://bioconductor.org Using R version 2.15, BiocInstaller version 1.4.9. Installing package(s) 'Rdisop' also installing the dependency ???Rcpp??? trying URL 'http://cran.fhcrc.org/bin/windows/contrib/2.15/Rcpp_0.10.2.zip' Error in download.file(url, destfile, method, mode = "wb", ...) : cannot open URL 'http://cran.fhcrc.org/bin/windows/contrib/2.15/Rcpp_0.10.2.zip' In addition: Warning message: In download.file(url, destfile, method, mode = "wb", ...) : cannot open: HTTP status was '404 Not Found' Warning in download.packages(pkgs, destdir = tmpd, available = available, : download of package ???Rcpp??? failed trying URL 'http://bioconductor.org/packages/2.10/bioc/bin/windows/con trib/2.15/Rdisop_1.16.0.zip' Content type 'application/zip' length 923472 bytes (901 Kb) opened URL downloaded 901 Kb package ???Rdisop??? successfully unpacked and MD5 sums checked > library(Rdisop) Loading required package: RcppClassic Error in gzfile(file, "rb") : cannot open the connection -- output of sessionInfo(): R version 2.15.1 (2012-06-22) Platform: x86_64-pc-mingw32/x64 (64-bit) locale: [1] LC_COLLATE=English_United States.1252 [2] LC_CTYPE=English_United States.1252 [3] LC_MONETARY=English_United States.1252 [4] LC_NUMERIC=C [5] LC_TIME=English_United States.1252 attached base packages: [1] grDevices datasets splines graphics stats tcltk utils [8] methods base other attached packages: [1] svSocket_0.9-54 TinnR_1.0-5 R2HTML_2.2 Hmisc_3.9-3 [5] survival_2.36-14 loaded via a namespace (and not attached): [1] cluster_1.14.2 grid_2.15.1 lattice_0.20-6 svMisc_0.9-68 tools_2.15.1 -- Sent via the guest posting facility at bioconductor.org.
ADD COMMENTlink modified 5.4 years ago by Dan Tenenbaum ♦♦ 8.2k • written 5.4 years ago by Guest User12k
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gravatar for Dan Tenenbaum
5.4 years ago by
Dan Tenenbaum ♦♦ 8.2k
United States
Dan Tenenbaum ♦♦ 8.2k wrote:
On Mon, Mar 25, 2013 at 12:05 PM, Lin [guest] <guest at="" bioconductor.org=""> wrote: > > Hello, > > I am trying to install Rdisop but got the following error which I thought meant the package was looking for older version of Rcpp that is not there anymore. Anyone knows how to fix this? Thank you. > >> source("http://bioconductor.org/biocLite.R") >> biocLite("Rdisop") > BioC_mirror: http://bioconductor.org > Using R version 2.15, BiocInstaller version 1.4.9. > Installing package(s) 'Rdisop' > also installing the dependency ???Rcpp??? > > trying URL 'http://cran.fhcrc.org/bin/windows/contrib/2.15/Rcpp_0.10.2.zip' > Error in download.file(url, destfile, method, mode = "wb", ...) : > cannot open URL 'http://cran.fhcrc.org/bin/windows/contrib/2.15/Rcpp_0.10.2.zip' Start with a fresh R session. You should be getting Rcpp_0.10.3, not 0.10.2. In a fresh R session, type: source("http://bioconductor.org/biocLite.R") biocLite("Rcpp") If that works, try biocLite("Rdisop") If it doesn't work, send us the output of your commands. Dan > In addition: Warning message: > In download.file(url, destfile, method, mode = "wb", ...) : > cannot open: HTTP status was '404 Not Found' > Warning in download.packages(pkgs, destdir = tmpd, available = available, : > download of package ???Rcpp??? failed > trying URL 'http://bioconductor.org/packages/2.10/bioc/bin/windows/c ontrib/2.15/Rdisop_1.16.0.zip' > Content type 'application/zip' length 923472 bytes (901 Kb) > opened URL > downloaded 901 Kb > > package ???Rdisop??? successfully unpacked and MD5 sums checked > >> library(Rdisop) > Loading required package: RcppClassic > Error in gzfile(file, "rb") : cannot open the connection > > > -- output of sessionInfo(): > > R version 2.15.1 (2012-06-22) > Platform: x86_64-pc-mingw32/x64 (64-bit) > > locale: > [1] LC_COLLATE=English_United States.1252 > [2] LC_CTYPE=English_United States.1252 > [3] LC_MONETARY=English_United States.1252 > [4] LC_NUMERIC=C > [5] LC_TIME=English_United States.1252 > > attached base packages: > [1] grDevices datasets splines graphics stats tcltk utils > [8] methods base > > other attached packages: > [1] svSocket_0.9-54 TinnR_1.0-5 R2HTML_2.2 Hmisc_3.9-3 > [5] survival_2.36-14 > > loaded via a namespace (and not attached): > [1] cluster_1.14.2 grid_2.15.1 lattice_0.20-6 svMisc_0.9-68 tools_2.15.1 > > -- > Sent via the guest posting facility at bioconductor.org. > > _______________________________________________ > Bioconductor mailing list > Bioconductor at r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor
ADD COMMENTlink written 5.4 years ago by Dan Tenenbaum ♦♦ 8.2k
Thank you for your help. I tried your suggestion and it worked. > Date: Mon, 5 Mar 013 4::1::1 -700< > Subject: Re: [BioC] installing Rdisop > From: dtenenba@fhcrc.org > To: guest@bioconductor.org > CC: bioconductor@r-project.org; baccts@hotmail.com; sneumann@ipb- halle.de > > On Mon, Mar 5,, 013 at 2::5 PM, Lin [guest] <guest@bioconductor.org> wrote: > > > > Hello, > > > > I am trying to install Rdisop but got the following error which I thought meant the package was looking for older version of Rcpp that is not there anymore. Anyone knows how to fix this? Thank you. > > > >> source("http://bioconductor.org/biocLite.R") > >> biocLite("Rdisop") > > BioC_mirror: http://bioconductor.org > > Using R version ..5,, BiocInstaller version ...... > > Installing package(s) 'Rdisop' > > also installing the dependency ‘Rcpp’ > > > > trying URL 'http://cran.fhcrc.org/bin/windows/contrib/..5//Rcpp_..0....zip' > > Error in download.file(url, destfile, method, mode = "wb", ...) : > > cannot open URL 'http://cran.fhcrc.org/bin/windows/contrib/..5//Rcpp_..0....zip' > > > Start with a fresh R session. > You should be getting Rcpp_..0..,, not ..0.... > In a fresh R session, type: > > source("http://bioconductor.org/biocLite.R") > biocLite("Rcpp") > > If that works, try > biocLite("Rdisop") > > If it doesn't work, send us the output of your commands. > > Dan > > > > > In addition: Warning message: > > In download.file(url, destfile, method, mode = "wb", ...) : > > cannot open: HTTP status was '04 Not Found' > > Warning in download.packages(pkgs, destdir = tmpd, available = available, : > > download of package ‘Rcpp’ failed > > trying URL 'http://bioconductor.org/packages/..0//bioc/bin/windows /contrib/..5//Rdisop_..6....zip' > > Content type 'application/zip' length 23472 bytes (01 Kb) > > opened URL > > downloaded 01 Kb > > > > package ‘Rdisop’ successfully unpacked and MD sums checked > > > >> library(Rdisop) > > Loading required package: RcppClassic > > Error in gzfile(file, "rb") : cannot open the connection > > > > > > -- output of sessionInfo(): > > > > R version ..5.. (012--6--2)) > > Platform: x6__4--pc-mingw2//x4 (4--bit) > > > > locale: > > []] LC_COLLATE=English_United States.252< > > []] LC_CTYPE=English_United States.252< > > []] LC_MONETARY=English_United States.252< > > []] LC_NUMERIC=C > > []] LC_TIME=English_United States.252< > > > > attached base packages: > > []] grDevices datasets splines graphics stats tcltk utils > > []] methods base > > > > other attached packages: > > []] svSocket_..--4 TinnR_..-- RHHTML_.. Hmisc_..--< > > []] survival_..6--4< > > > > loaded via a namespace (and not attached): > > []] cluster_..4.. grid_..5.. lattice_..0-- svMisc_..--8 tools_..5..< > > > > -- > > Sent via the guest posting facility at bioconductor.org. > > > > _______________________________________________ > > Bioconductor mailing list > > Bioconductor@r-project.org > > https://stat.ethz.ch/mailman/listinfo/bioconductor > > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor [[alternative HTML version deleted]]
ADD REPLYlink written 5.4 years ago by C Lin60
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