Is it possible to get SRA sample attributes for a given sample or experiment ID?
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@vladimir-morozov-2740
Last seen 7.0 years ago
Hi, Is it possible to get SRA sample attributes for a given sample or experiment ID? Here is the sample http://www.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?sample=SRS388155. With SRAdb package: > dbGetQuery(sra_con,"select * from sample where sample_accession = 'SRS388155' ") sample_ID sample_alias sample_accession broker_name center_name taxon_id 1 354784 <na> SRS388155 <na> <na> NA scientific_name common_name anonymized_name individual_name description 1 <na> <na> <na> <na> <na> sra_link sample_url_link xref_link sample_entrez_link ddbj_link ena_link 1 <na> <na> <na> <na> <na> <na> sample_attribute submission_accession sradb_updated 1 <na> SRA065858 2013-02-16 20:06:43 getSRA (search_terms ='SOD1_G93A',out_types=c('sample','experiment','run'), sra_con=sra_con)# return 0 rows. Any suggestions? Thanks Vlad ********************************************************************** ***************** The information contained in this electronic message is ...{{dropped:18}}
SRAdb SRAdb • 934 views
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