Entering edit mode
Shields, Rusty IMS
▴
40
@shields-rusty-ims-5859
Last seen 10.3 years ago
Hi all,
I've run into a problem when attempting to install the globaltest
package from Bioconductor. I'm using R 2.14.0 on 64bit SLES 11. Let
me know what other information you might need about my system to
troubleshoot this.
Using the method described for this installation on the Bioconductor
website:
source("http://bioconductor.org/biocLite.R")
biocLite("globaltest")
I get and the following result, which I can't find an reference to on
the list archives:
> biocLite("globaltest")
BioC_mirror: 'http://www.bioconductor.org'
Using R version 2.14, BiocInstaller version 1.2.1.
Installing package(s) 'globaltest'
trying URL 'http://www.bioconductor.org/packages/2.9/bioc/src/contrib/
globaltest_5.8.1.tar.gz'
Content type 'application/x-gzip' length 956376 bytes (933 Kb)
opened URL
==================================================
downloaded 933 Kb
* installing *source* package âglobaltestâ ...
** R
** data
** inst
** preparing package for lazy loading
Warning in .simpleDuplicateClass(def, prev) :
A specification for class âdata.frameOrNULLâ
Creating a generic
function for âsortâ from package âbaseâ in package âglobaltestâ
Creating a generic function for âmodel.matrixâ from package âstatsâ in
package âglobaltestâ
Creating a generic function for âcoefficientsâ from package âstatsâ in
package âglobaltestâ
Creating a generic function for âfitted.valuesâ from package âstatsâ
in package âglobaltestâ
Creating a generic function for âresidualsâ from package âstatsâ in
package âglobaltestâ
Error in setMethod("combine", signature(x = "gt.result", y =
"gt.result"), :
no existing definition for function âcombineâ
Error : unable to load R code in package âglobaltestâ
ERROR: lazy loading failed for package âglobaltestâ
* removing â/usr/local/R-2.14.0/lib64/R/library/globaltestâ
The downloaded packages are in
â/tmp/RtmpdCwjNB/downloaded_packagesâ
Updating HTML index of packages in '.Library'
Making packages.html ... done
Old packages: 'caret'
Update all/some/none? [a/s/n]:
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