Hi, I have cancer data obtained using Agilent Human DNA Methylation Microarrays. I have a total of 18 samples - 2 control and 16 cancer patients (divided into 4 groups based on ZAP+ and ZAP- mutation). The data is obtained as a '.txt' file from Agilent Feature Extraction software. I would like to know the packages available in the Bioconductor to analyze this data and analyze pathways and DMR gene clusters. If none of the packages is present, please guide me how to proceed with the work. Regards, -- *Arpit Jain* B.Tech / M.Tech in Bioinformatics and Biotechnology Junior Research Fellow, Indian institute of Technology-Delhi, New Delhi, India Ph: - +91 - 9582283122, +91 - 9928026980 [[alternative HTML version deleted]]