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On 5/29/2013 12:11 AM, deepika lakhwani wrote:
> Thanks for your advice..
> I am using R 2.15 version so xps is not working on it. Suggest me
> is better than oligo or not.
I don't know if xps is better than oligo or not. I suspect they are
roughly comparable, although I have no experience with xps other than
trying to install it back when installing ROOT on Windows was more
difficult than it appears to be these days. I will say that xps has
around for a long time, and most certainly can be installed using
You do need to install ROOT first. See the README that comes with the
> On Tue, May 28, 2013 at 8:59 PM, James W. MacDonald <jmacdon at="" uw.edu=""> <mailto:jmacdon at="" uw.edu="">> wrote:
> Hi Deepika,
> On 5/28/2013 9:58 AM, deepika lakhwani wrote:
> Dear Sir,
> I have arabidopsis cel files and for differential expression
> analysis, i am
> using AffylmGUI package but its not running because
> AraGene-1_0-st CDF file
> is not available on
> when i downloaded the data from affymetrix site, there are
> many files
> such as PGF, CLF, QCC files in it but no CDF files. what
> should i do ?
> Please suggest me. Can you upload the AraGene-1_0-st CDF
> or is there
> any other solution for it.
> You should be processing these arrays using either oligo or xps.
> If you use oligo, the correct file will automatically be
> downloaded for you.
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> James W. MacDonald, M.S.
> University of Washington
> Environmental and Occupational Health Sciences
> 4225 Roosevelt Way NE, # 100
> Seattle WA 98105-6099
James W. MacDonald, M.S.
University of Washington
Environmental and Occupational Health Sciences
4225 Roosevelt Way NE, # 100
Seattle WA 98105-6099