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Question: GoSeq error!
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gravatar for Emanuela
5.5 years ago by
Emanuela10
Emanuela10 wrote:
Hi all, When creating pwf I encounter this type of message: > pwf <- nullp(genes, "hg19", "ensGene") Loading hg19 length data... Error in qr.R(qrx) : could not find symbol "..." in environment of the generic function I have tried to take a look into the matrix and it's basically composed of Ensembl IDs and 1-0 values accordingly to differentially and non differentially expressed genes. > sessionInfo() R version 2.15.2 (2012-10-26) Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit) locale: [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8 Thanks!!! Emanuela
ADD COMMENTlink modified 5.5 years ago by Nadia Davidson270 • written 5.5 years ago by Emanuela10
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gravatar for Nadia Davidson
5.5 years ago by
Australia
Nadia Davidson270 wrote:
> Hi all, > > When creating pwf I encounter this type of message: > > pwf <- nullp(genes, "hg19", "ensGene") > Loading hg19 length data... > Error in qr.R(qrx) : > could not find symbol "..." in environment of the generic function > > I have tried to take a look into the matrix and it's basically composed of > Ensembl IDs and 1-0 values accordingly to differentially > and non differentially expressed genes. > > sessionInfo() > R version 2.15.2 (2012-10-26) > Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit) > locale: > [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8 > > Thanks!!! > Emanuela > Hi Emanuela, A few other people have reported this same issue to me, but despite my best effort I have not been able to reproduce it. Some people have reported that it goes away if you upgrade to R versions 2.15.3 or 3, so if you can upgrade, I would suggest trying that. Let me know if this either does or doesn't help, or if you find out anything else about this error. Cheers, Nadia.
ADD COMMENTlink written 5.5 years ago by Nadia Davidson270
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