org.Hs.eg.db namespace issue
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Anthony Bosco ▴ 500
@anthony-bosco-517
Last seen 10.2 years ago
Hi, I recently updated the org.Hs.eg.db package but I cannot load it into R session? Does anyone know how to resolve this issue? Loading required package: DBI Error : .onLoad failed in loadNamespace() for 'org.Hs.eg.db', details: call: get(name, envir = asNamespace(pkg), inherits = FALSE) error: object '.setDummyField' not found In addition: Warning messages: 1: package 'AnnotationDbi' was built under R version 3.0.1 2: package 'Biobase' was built under R version 3.0.1 3: package 'RSQLite' was built under R version 3.0.1 Error: package or namespace load failed for 'org.Hs.eg.db' sessionInfo() R version 3.0.0 (2013-04-03) Platform: x86_64-w64-mingw32/x64 (64-bit) locale: [1] LC_COLLATE=English_Australia.1252 LC_CTYPE=English_Australia.1252 LC_MONETARY=English_Australia.1252 LC_NUMERIC=C LC_TIME=English_Australia.1252 attached base packages: [1] parallel stats graphics grDevices utils datasets methods base other attached packages: [1] RSQLite_0.11.4 DBI_0.2-7 AnnotationDbi_1.22.6 Biobase_2.20.1 BiocGenerics_0.6.0 loaded via a namespace (and not attached): [1] IRanges_1.18.1 stats4_3.0.0 Best regards, Anthony Bosco [[alternative HTML version deleted]]
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@dan-tenenbaum-4957
Last seen 10.2 years ago
United States
On Jul 3, 2013 7:24 PM, "Anthony Bosco" <anthonyb@ichr.uwa.edu.au> wrote: > > Hi, > > > > I recently updated the org.Hs.eg.db package but I cannot load it into R > session? > > > > Does anyone know how to resolve this issue? > > Upgrading to R 3.0.1 should fix it. Dan > > Loading required package: DBI > > Error : .onLoad failed in loadNamespace() for 'org.Hs.eg.db', details: > > call: get(name, envir = asNamespace(pkg), inherits = FALSE) > > error: object '.setDummyField' not found > > In addition: Warning messages: > > 1: package 'AnnotationDbi' was built under R version 3.0.1 > > 2: package 'Biobase' was built under R version 3.0.1 > > 3: package 'RSQLite' was built under R version 3.0.1 > > Error: package or namespace load failed for 'org.Hs.eg.db' > > > > sessionInfo() > > > > R version 3.0.0 (2013-04-03) > > Platform: x86_64-w64-mingw32/x64 (64-bit) > > > > locale: > > [1] LC_COLLATE=English_Australia.1252 LC_CTYPE=English_Australia.1252 > LC_MONETARY=English_Australia.1252 LC_NUMERIC=C > LC_TIME=English_Australia.1252 > > > > attached base packages: > > [1] parallel stats graphics grDevices utils datasets methods > base > > > > other attached packages: > > > > [1] RSQLite_0.11.4 DBI_0.2-7 AnnotationDbi_1.22.6 > Biobase_2.20.1 BiocGenerics_0.6.0 > > > > loaded via a namespace (and not attached): > > [1] IRanges_1.18.1 stats4_3.0.0 > > > > Best regards, > > > > Anthony Bosco > > > > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioconductor mailing list > Bioconductor@r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor [[alternative HTML version deleted]]
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@dan-tenenbaum-4957
Last seen 10.2 years ago
United States
On Wednesday, July 3, 2013, Anthony Bosco <anthonyb@ichr.uwa.edu.au> wrote: > Hi, > > > > I recently updated the org.Hs.eg.db package but I cannot load it into R > session? > > > > Does anyone know how to resolve this issue? > > Upgrading to R 3.0.1 should fix it. Dan > > Loading required package: DBI > > Error : .onLoad failed in loadNamespace() for 'org.Hs.eg.db', details: > > call: get(name, envir = asNamespace(pkg), inherits = FALSE) > > error: object '.setDummyField' not found > > In addition: Warning messages: > > 1: package 'AnnotationDbi' was built under R version 3.0.1 > > 2: package 'Biobase' was built under R version 3.0.1 > > 3: package 'RSQLite' was built under R version 3.0.1 > > Error: package or namespace load failed for 'org.Hs.eg.db' > > > > sessionInfo() > > > > R version 3.0.0 (2013-04-03) > > Platform: x86_64-w64-mingw32/x64 (64-bit) > > > > locale: > > [1] LC_COLLATE=English_Australia.1252 LC_CTYPE=English_Australia.1252 > LC_MONETARY=English_Australia.1252 LC_NUMERIC=C > LC_TIME=English_Australia.1252 > > > > attached base packages: > > [1] parallel stats graphics grDevices utils datasets methods > base > > > > other attached packages: > > > > [1] RSQLite_0.11.4 DBI_0.2-7 AnnotationDbi_1.22.6 > Biobase_2.20.1 BiocGenerics_0.6.0 > > > > loaded via a namespace (and not attached): > > [1] IRanges_1.18.1 stats4_3.0.0 > > > > Best regards, > > > > Anthony Bosco > > > > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioconductor mailing list > Bioconductor@r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor > [[alternative HTML version deleted]]
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Hi Dan, The issue is now resolved.. Thank you very much. Best regards, Anthony From: dandante@gmail.com [mailto:dandante@gmail.com] On Behalf Of Dan Tenenbaum Sent: Thursday, 4 July 2013 10:43 AM To: Anthony Bosco Cc: bioconductor@r-project.org Subject: Re: [BioC] org.Hs.eg.db namespace issue On Wednesday, July 3, 2013, Anthony Bosco <anthonyb@ichr.uwa.edu.au> wrote: > Hi, > > > > I recently updated the org.Hs.eg.db package but I cannot load it into R > session? > > > > Does anyone know how to resolve this issue? > > Upgrading to R 3.0.1 should fix it. Dan > > Loading required package: DBI > > Error : .onLoad failed in loadNamespace() for 'org.Hs.eg.db', details: > > call: get(name, envir = asNamespace(pkg), inherits = FALSE) > > error: object '.setDummyField' not found > > In addition: Warning messages: > > 1: package 'AnnotationDbi' was built under R version 3.0.1 > > 2: package 'Biobase' was built under R version 3.0.1 > > 3: package 'RSQLite' was built under R version 3.0.1 > > Error: package or namespace load failed for 'org.Hs.eg.db' > > > > sessionInfo() > > > > R version 3.0.0 (2013-04-03) > > Platform: x86_64-w64-mingw32/x64 (64-bit) > > > > locale: > > [1] LC_COLLATE=English_Australia.1252 LC_CTYPE=English_Australia.1252 > LC_MONETARY=English_Australia.1252 LC_NUMERIC=C > LC_TIME=English_Australia.1252 > > > > attached base packages: > > [1] parallel stats graphics grDevices utils datasets methods > base > > > > other attached packages: > > > > [1] RSQLite_0.11.4 DBI_0.2-7 AnnotationDbi_1.22.6 > Biobase_2.20.1 BiocGenerics_0.6.0 > > > > loaded via a namespace (and not attached): > > [1] IRanges_1.18.1 stats4_3.0.0 > > > > Best regards, > > > > Anthony Bosco > > > > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioconductor mailing list > Bioconductor@r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor > -- This message has been scanned for viruses and \ danger...{{dropped:9}}
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