Entering edit mode
Hi Mousami,
Yes, you can use data matrix or vector for sure. With pathview package
loaded, just check the help info for the pathview function by typing
in:
?pathview
Read the description for argument ?gene.data?.
The .rda is just a data file format for storage in the hard disk,
after loading the data into R (console or command line session), you
get your R data objects in any formats like matrix, vector,
data.frame, list etc.
You may follow the first tutorial example in page 3 of the vignette,
and check the format of input data:
head(gse16873.d)
class(gse16873.d)
HTH.
Weijun
--------------------------------------------
On Wed, 7/10/13, Mousami Srivastava <sm.iitbtbi at="" gmail.com=""> wrote:
Subject: Query regarding "pathview"
Date: Wednesday, July 10, 2013, 6:07 AM
Dear?Weijun
Luo,
Greetings from Mousami.
Myself working as a Research Fellow on
R-programming.?
I have tried
"pathview" package with the example r-script given
in the bioconductor site. But in this work most of the work
has completed by using .rda file. In the Supplementary file
uploaded on "http://bioinformatics.oxfordjournals.org/content/early/2
013/06/11/bioinformatics.btt285.full", mentioned that format could be
both such as matrix or vector.?
So, can I do my work with the help of
data matrix or vector generated on R-programming
console?
Otherwise, I request you to please let
me know the way of converting vector and matrix format into
.rda format.
Please do the needful.
Thank you for your time. ?
--
Regards,
Mousami Srivastava
Email : sm.iitbtbi at gmail.com??
?? ? ???
Mob. No.: +91-9555896841? ?
Research Scholar
DIPAS, DRDO
Delhi
India