installing bioconductor
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@warren-pettitt-6144
Last seen 9.6 years ago
I first want to thank those responsible for such a great open source module. I cannot seem to download it at work. The error message I get is: Installing package into 'C:/Users/warrenp/Documents/R/win-library/3.0' (as 'lib' is unspecified) trying URL 'http://www.bioconductor.org/packages/2.12/bioc/bin/windows/contrib/3. 0/Bi ocInstaller_1.10.3.zip' Error in download.file(url, destfile, method, mode = "wb", ...) : cannot open URL 'http://www.bioconductor.org/packages/2.12/bioc/bin/windows/contrib/3. 0/Bi ocInstaller_1.10.3.zip' In addition: Warning message: In download.file(url, destfile, method, mode = "wb", ...) : cannot open: HTTP status was '0 (nil)' Warning in download.packages(pkgs, destdir = tmpd, available = available, : download of package 'BiocInstaller' failed 'biocLite.R' failed to install 'BiocInstaller', use 'install.packages("BiocInstaller", repos="http://www.bioconductor.org/packages/2.12/bioc")' In R I did change the "start in" property to a folder on my desktop. I have tried using the install.packages message at the end of the error message and I get this message when I do that: Installing package into 'C:/Users/warrenp/Documents/R/win-library/3.0' (as 'lib' is unspecified) trying URL 'http://www.bioconductor.org/packages/2.12/bioc/bin/windows/contrib/3. 0/Bi ocInstaller_1.10.3.zip' Error in download.file(url, destfile, method, mode = "wb", ...) : cannot open URL 'http://www.bioconductor.org/packages/2.12/bioc/bin/windows/contrib/3. 0/Bi ocInstaller_1.10.3.zip' In addition: Warning message: In download.file(url, destfile, method, mode = "wb", ...) : cannot open: HTTP status was '0 (nil)' Warning in download.packages(pkgs, destdir = tmpd, available = available, : download of package 'BiocInstaller' failed I have tried the FAQ sites and it may be there but I have not found help for this error message. Thanks again for all your work on this open source site. Dr. Pettitt's website Dr. Pettitt's website
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Dan Tenenbaum ★ 8.2k
@dan-tenenbaum-4256
Last seen 3.2 years ago
United States
Hi Warren, ----- Original Message ----- > From: "Warren Pettitt" <warren.pettitt at="" arizonachristian.edu=""> > To: bioconductor at r-project.org > Sent: Wednesday, September 11, 2013 9:22:04 AM > Subject: [BioC] installing bioconductor > > I first want to thank those responsible for such a great open source > module. I cannot seem to download it at work. The error message I > get > is: > > Installing package into > 'C:/Users/warrenp/Documents/R/win-library/3.0' > (as 'lib' is unspecified) > trying URL > 'http://www.bioconductor.org/packages/2.12/bioc/bin/windows/contrib/ 3.0/Bi > ocInstaller_1.10.3.zip' > Error in download.file(url, destfile, method, mode = "wb", ...) : > cannot open URL > 'http://www.bioconductor.org/packages/2.12/bioc/bin/windows/contrib/ 3.0/Bi > ocInstaller_1.10.3.zip' > In addition: Warning message: > In download.file(url, destfile, method, mode = "wb", ...) : > cannot open: HTTP status was '0 (nil)' > Warning in download.packages(pkgs, destdir = tmpd, available = > available, > : > download of package 'BiocInstaller' failed > 'biocLite.R' failed to install 'BiocInstaller', use > 'install.packages("BiocInstaller", > repos="http://www.bioconductor.org/packages/2.12/bioc")' > > In R I did change the "start in" property to a folder on my desktop. > > I have tried using the install.packages message at the end of the > error > message and I get this message when I do that: > > Installing package into > 'C:/Users/warrenp/Documents/R/win-library/3.0' > (as 'lib' is unspecified) > trying URL > 'http://www.bioconductor.org/packages/2.12/bioc/bin/windows/contrib/ 3.0/Bi > ocInstaller_1.10.3.zip' > Error in download.file(url, destfile, method, mode = "wb", ...) : > cannot open URL > 'http://www.bioconductor.org/packages/2.12/bioc/bin/windows/contrib/ 3.0/Bi > ocInstaller_1.10.3.zip' > In addition: Warning message: > In download.file(url, destfile, method, mode = "wb", ...) : > cannot open: HTTP status was '0 (nil)' > Warning in download.packages(pkgs, destdir = tmpd, available = > available, > : > download of package 'BiocInstaller' failed > > I have tried the FAQ sites and it may be there but I have not found > help > for this error message. Thanks again for all your work on this open > source site. It could be that you are behind a restrictive firewall or proxy. Do you get different results if you first enter the command: setInternet2(TRUE) ? Dan > > Dr. Pettitt's website > > > > > > > Dr. Pettitt's website > > _______________________________________________ > Bioconductor mailing list > Bioconductor at r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: > http://news.gmane.org/gmane.science.biology.informatics.conductor
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