Problem installing metaXCMS for Windows. -- output of sessionInfo(): After a few days trying to get metaXCMS working it didn't succeed. The problem is loading of a mzR ? There is a different version of Rcpp ? I hope someone can help me with this problem ? Thank you already for your help. Best, Wishes, Siebolt. > library(metaXCMS) Loading required package: cairoDevice Loading required package: RGtk2 Loading required package: Biobase Loading required package: BiocGenerics Attaching package: ???BiocGenerics??? The following object(s) are masked from ???package:stats???: xtabs The following object(s) are masked from ???package:base???: anyDuplicated, cbind, colnames, duplicated, eval, Filter, Find, get, intersect, lapply, Map, mapply, mget, order, paste, pmax, pmax.int, pmin, pmin.int, Position, rbind, Reduce, rep.int, rownames, sapply, setdiff, table, tapply, union, unique Welcome to Bioconductor Vignettes contain introductory material; view with 'browseVignettes()'. To cite Bioconductor, see 'citation("Biobase")', and for packages 'citation("pkgname")'. Loading required package: xcms Loading required package: mzR Loading required package: Rcpp Error : .onLoad failed in loadNamespace() for 'mzR', details: call: value[[3L]](cond) error: failed to load module Ramp from package mzR object '.setDummyField' not found In addition: Warning messages: 1: package ???Rcpp??? was built under R version 3.0.1 2: In fun(libname, pkgname) : mzR has been built against a different Rcpp version than is installed on your system. This might lead to errors when loading mzR. If you encounter such issues, please send a report, including the output of sessionInfo() to the Bioc mailing list -- http://www.bioconductor.org/help/mailing-list. Error: package ???mzR??? could not be loaded > license() This software is distributed under the terms of the GNU General Public License, either Version 2, June 1991 or Version 3, June 2007. The terms of version 2 of the license are in a file called COPYING which you should have received with this software and which can be displayed by RShowDoc("COPYING"). Version 3 of the license can be displayed by RShowDoc("GPL-3"). Copies of both versions 2 and 3 of the license can be found at http://www.R-project.org/Licenses/. A small number of files (the API header files listed in R_DOC_DIR/COPYRIGHTS) are distributed under the LESSER GNU GENERAL PUBLIC LICENSE, version 2.1 or later. This can be displayed by RShowDoc("LGPL-2.1"), or obtained at the URI given. Version 3 of the license can be displayed by RShowDoc("LGPL-3"). 'Share and Enjoy.' > sessionInfo() R version 2.15.3 (2013-03-01) Platform: i386-w64-mingw32/i386 (32-bit) locale: [1] LC_COLLATE=English_United States.1252 LC_CTYPE=English_United States.1252 LC_MONETARY=English_United States.1252 LC_NUMERIC=C LC_TIME=English_United States.1252 attached base packages: [1] stats graphics grDevices utils datasets methods base other attached packages: [1] Rcpp_0.10.4 Biobase_2.18.0 BiocGenerics_0.4.0 RGtk2_2.20.25 cairoDevice_2.19 BiocInstaller_1.8.3 loaded via a namespace (and not attached): [1] tools_2.15.3 -- Sent via the guest posting facility at bioconductor.org.

Dear Siebolt, You are using R 2.15.3 while Rcpp 0.10.4 has been build under 3.0.1; this is likely the source of the problem. Is it possible for you to install the latest version of R (i.e. 3.0) - this would most likely fix you issue. Best wishes, Laurent On 13 September 2013 11:47, Siebolt de Boer [guest] <guest at="" bioconductor.org=""> wrote: > > Problem installing metaXCMS for Windows. > > -- output of sessionInfo(): > > After a few days trying to get metaXCMS working it didn't succeed. > > The problem is loading of a mzR ? There is a different version of Rcpp ? > > I hope someone can help me with this problem ? > > Thank you already for your help. > > Best, Wishes, Siebolt. > >> library(metaXCMS) > Loading required package: cairoDevice > Loading required package: RGtk2 > Loading required package: Biobase > Loading required package: BiocGenerics > > Attaching package: ???BiocGenerics??? > > The following object(s) are masked from ???package:stats???: > > xtabs > > The following object(s) are masked from ???package:base???: > > anyDuplicated, cbind, colnames, duplicated, eval, Filter, Find, get, intersect, lapply, Map, mapply, mget, order, paste, pmax, pmax.int, pmin, pmin.int, Position, rbind, Reduce, rep.int, rownames, sapply, > setdiff, table, tapply, union, unique > > Welcome to Bioconductor > > Vignettes contain introductory material; view with 'browseVignettes()'. To cite Bioconductor, see 'citation("Biobase")', and for packages 'citation("pkgname")'. > > Loading required package: xcms > Loading required package: mzR > Loading required package: Rcpp > Error : .onLoad failed in loadNamespace() for 'mzR', details: > call: value[[3L]](cond) > error: failed to load module Ramp from package mzR > object '.setDummyField' not found > In addition: Warning messages: > 1: package ???Rcpp??? was built under R version 3.0.1 > 2: In fun(libname, pkgname) : > mzR has been built against a different Rcpp version > than is installed on your system. This might lead to errors > when loading mzR. If you encounter such issues, please send > a report, including the output of sessionInfo() to the Bioc > mailing list -- http://www.bioconductor.org/help/mailing-list. > Error: package ???mzR??? could not be loaded >> license() > > This software is distributed under the terms of the GNU General > Public License, either Version 2, June 1991 or Version 3, June 2007. > The terms of version 2 of the license are in a file called COPYING > which you should have received with > this software and which can be displayed by RShowDoc("COPYING"). > Version 3 of the license can be displayed by RShowDoc("GPL-3"). > > Copies of both versions 2 and 3 of the license can be found > at http://www.R-project.org/Licenses/. > > A small number of files (the API header files listed in > R_DOC_DIR/COPYRIGHTS) are distributed under the > LESSER GNU GENERAL PUBLIC LICENSE, version 2.1 or later. > This can be displayed by RShowDoc("LGPL-2.1"), > or obtained at the URI given. > Version 3 of the license can be displayed by RShowDoc("LGPL-3"). > > 'Share and Enjoy.' > >> sessionInfo() > R version 2.15.3 (2013-03-01) > Platform: i386-w64-mingw32/i386 (32-bit) > > locale: > [1] LC_COLLATE=English_United States.1252 LC_CTYPE=English_United States.1252 LC_MONETARY=English_United States.1252 LC_NUMERIC=C LC_TIME=English_United States.1252 > > attached base packages: > [1] stats graphics grDevices utils datasets methods base > > other attached packages: > [1] Rcpp_0.10.4 Biobase_2.18.0 BiocGenerics_0.4.0 RGtk2_2.20.25 cairoDevice_2.19 BiocInstaller_1.8.3 > > loaded via a namespace (and not attached): > [1] tools_2.15.3 > > -- > Sent via the guest posting facility at bioconductor.org. > > _______________________________________________ > Bioconductor mailing list > Bioconductor at r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor -- Laurent Gatto - http://proteome.sysbiol.cam.ac.uk/lgatto/ Cambridge Centre for Proteomics - http://www.bio.cam.ac.uk/proteomics Using R/Bioconductor for proteomics data analysis - http://lgatto.github.io/RforProteomics/