Pathview graph with multiple states/samples or time series
1
1
Entering edit mode
Luo Weijun ★ 1.5k
@luo-weijun-1783
Last seen 10 weeks ago
United States
Pathview now can plot/integrate/compare multiple states/samples or time series in the same graph. Please check Figure 6 - 7 for examples and Subsection 7.2 in the vignette for details. Graphviz view can automatic choose different types of legends, either on nodes (Figure 5b), edges (Figure 2) or both (Figure 3) depending on the specific pathways. These features are available with the latest release of pathview (1.1.7 or newer) and you need to work with BioC 2.13 (current devel version) or newer version: http://bioconductor.org/packages/2.13/bioc/html/pathview.html Thanks for your interest and support. Weijun Luo
Pathways graph Pathways graph • 1.0k views
ADD COMMENT
1
Entering edit mode
@atanaskamburov-14948
Last seen 3.6 years ago

Thank you for this very useful addition!

Is it possible to add a legend of what the different states/samples are?  A simple list of condition/sample names written on the png will probably suffice for all applications.

Thanks again,
Atanas

ADD COMMENT

Login before adding your answer.

Traffic: 224 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6