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Question: Pathview graph with multiple states/samples or time series
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gravatar for Luo Weijun
4.5 years ago by
Luo Weijun1.4k
United States
Luo Weijun1.4k wrote:
Pathview now can plot/integrate/compare multiple states/samples or time series in the same graph. Please check Figure 6 - 7 for examples and Subsection 7.2 in the vignette for details. Graphviz view can automatic choose different types of legends, either on nodes (Figure 5b), edges (Figure 2) or both (Figure 3) depending on the specific pathways. These features are available with the latest release of pathview (1.1.7 or newer) and you need to work with BioC 2.13 (current devel version) or newer version: http://bioconductor.org/packages/2.13/bioc/html/pathview.html Thanks for your interest and support. Weijun Luo
ADD COMMENTlink modified 10 weeks ago by atanas.kamburov0 • written 4.5 years ago by Luo Weijun1.4k
1
gravatar for atanas.kamburov
10 weeks ago by
atanas.kamburov0 wrote:

Thank you for this very useful addition!

Is it possible to add a legend of what the different states/samples are?  A simple list of condition/sample names written on the png will probably suffice for all applications.

Thanks again,
Atanas

ADD COMMENTlink written 10 weeks ago by atanas.kamburov0
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