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Jerry Cholo
▴
190
@jerry-cholo-6218
Last seen 10.1 years ago
Hello,
To analyze Human Gene 1.1 st array, I used these CDF files, which
are: HuGene-1_1-st-v1_ascii.CDF and (ii)
HuGene-1_1-st-v1,byTranscript-fsetid,pd.hugene.1.1.st.v1.cdf
(from *http://nmg-r.bioinformatics.nl/NuGO_R.html*<http: nmg-r.bioinf="" ormatics.nl="" nugo_r.html="">
). Unfortunately, I am getting the errors (see bellow) that stopped
me to
move forward in my work. Please let me know if there is another
website to
download this CDF file. FYI, I am using MATLAB "affygcrma" function.
Warning: The ChipType (HuGene-1_1-st-v1) of CEL file
sample01_HuGene1.1ST_C04_2.CEL does not match the ChipType
(HuGene-1_1-st-v1_ascii) of library file HuGene-1_1-st-v1_ascii.CDF.
> In celintensityread at 255
In affygcrma at 140
Furthermore, when I used "limma" (R-package) to analyze this array, I
got
another set of errors. Please provide me your comments and solutions
that
I could get some output results from this array.
Thanks,
Jerry
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