Question: Unable to install hgu133plus2.db
gravatar for Guest User
4.4 years ago by
Guest User12k
Guest User12k wrote:
Hi Everybody, I'm Ellie, having a package installation problem, When installing the package hgu133plus2.db on my win7 laptop through Rstudio I receive the following error. I'm not sure what I need to do to fix this. I've reinstalled MySQL Lite and updated R but have the same issue: "error: RS-DBI driver: (error in statement: near "s": syntax error)" Anybody have a similar problem or Idea. Thank You. Ellie P.S. Output: > library("hgu133plus2.db", lib.loc="C:/Users/Ellie's Angel/Documents/R/win-library/3.0") Loading required package: AnnotationDbi Loading required package: BiocGenerics Loading required package: parallel Attaching package: ???BiocGenerics??? The following objects are masked from ???package:parallel???: clusterApply, clusterApplyLB, clusterCall, clusterEvalQ, clusterExport, clusterMap, parApply, parCapply, parLapply, parLapplyLB, parRapply, parSapply, parSapplyLB The following object is masked from ???package:stats???: xtabs The following objects are masked from ???package:base???: anyDuplicated,, cbind, colnames, duplicated, eval, Filter, Find, get, intersect, lapply, Map, mapply, match, mget, order, paste, pmax,, pmin,, Position, rank, rbind, Reduce,, rownames, sapply, setdiff, sort, table, tapply, union, unique, unlist Loading required package: Biobase Welcome to Bioconductor Vignettes contain introductory material; view with 'browseVignettes()'. To cite Bioconductor, see 'citation("Biobase")', and for packages 'citation("pkgname")'. Loading required package: Loading required package: DBI Error : .onLoad failed in loadNamespace() for 'hgu133plus2.db', details: call: sqliteExecStatement(con, statement, error: RS-DBI driver: (error in statement: near "s": syntax error) Error: package or namespace load failed for ???hgu133plus2.db??? -- output of sessionInfo(): sessionInfo() R version 3.0.2 (2013-09-25) Platform: x86_64-w64-mingw32/x64 (64-bit) locale: [1] LC_COLLATE=English_United States.1252 LC_CTYPE=English_United States.1252 [3] LC_MONETARY=English_United States.1252 LC_NUMERIC=C [5] LC_TIME=English_United States.1252 attached base packages: [1] parallel stats graphics grDevices utils datasets methods base other attached packages: [1] RSQLite_0.11.4 DBI_0.2-7 AnnotationDbi_1.22.6 [5] Biobase_2.20.1 BiocGenerics_0.6.0 loaded via a namespace (and not attached): [1] IRanges_1.18.4 stats4_3.0.2 tools_3.0.2 -- Sent via the guest posting facility at
ADD COMMENTlink written 4.4 years ago by Guest User12k
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.2.0
Traffic: 417 users visited in the last hour