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Question: Unable to install hgu133plus2.db
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4.0 years ago by
Guest User12k
Guest User12k wrote:
Hi Everybody, I'm Ellie, having a package installation problem, When installing the package hgu133plus2.db on my win7 laptop through Rstudio I receive the following error. I'm not sure what I need to do to fix this. I've reinstalled MySQL Lite and updated R but have the same issue: "error: RS-DBI driver: (error in statement: near "s": syntax error)" Anybody have a similar problem or Idea. Thank You. Ellie P.S. Output: > library("hgu133plus2.db", lib.loc="C:/Users/Ellie's Angel/Documents/R/win-library/3.0") Loading required package: AnnotationDbi Loading required package: BiocGenerics Loading required package: parallel Attaching package: ???BiocGenerics??? The following objects are masked from ???package:parallel???: clusterApply, clusterApplyLB, clusterCall, clusterEvalQ, clusterExport, clusterMap, parApply, parCapply, parLapply, parLapplyLB, parRapply, parSapply, parSapplyLB The following object is masked from ???package:stats???: xtabs The following objects are masked from ???package:base???: anyDuplicated, as.data.frame, cbind, colnames, duplicated, eval, Filter, Find, get, intersect, lapply, Map, mapply, match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, Position, rank, rbind, Reduce, rep.int, rownames, sapply, setdiff, sort, table, tapply, union, unique, unlist Loading required package: Biobase Welcome to Bioconductor Vignettes contain introductory material; view with 'browseVignettes()'. To cite Bioconductor, see 'citation("Biobase")', and for packages 'citation("pkgname")'. Loading required package: org.Hs.eg.db Loading required package: DBI Error : .onLoad failed in loadNamespace() for 'hgu133plus2.db', details: call: sqliteExecStatement(con, statement, bind.data) error: RS-DBI driver: (error in statement: near "s": syntax error) Error: package or namespace load failed for ???hgu133plus2.db??? -- output of sessionInfo(): sessionInfo() R version 3.0.2 (2013-09-25) Platform: x86_64-w64-mingw32/x64 (64-bit) locale: [1] LC_COLLATE=English_United States.1252 LC_CTYPE=English_United States.1252 [3] LC_MONETARY=English_United States.1252 LC_NUMERIC=C [5] LC_TIME=English_United States.1252 attached base packages: [1] parallel stats graphics grDevices utils datasets methods base other attached packages: [1] org.Hs.eg.db_2.9.0 RSQLite_0.11.4 DBI_0.2-7 AnnotationDbi_1.22.6 [5] Biobase_2.20.1 BiocGenerics_0.6.0 loaded via a namespace (and not attached): [1] IRanges_1.18.4 stats4_3.0.2 tools_3.0.2 -- Sent via the guest posting facility at bioconductor.org.
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