Search
Question: GOtools: argument is of length zero
0
gravatar for Dr Gyorffy Balazs
13.0 years ago by
Dr Gyorffy Balazs320 wrote:
Hi all, I have tried to use the GOtools package, but I have encountered following problem after running the ontoCompare command: [1] "Starting ontoCompare..." Error in if (ncol(results) == 0) results <- NA : argument is of length zero What is the reason for this? My original script is pasted below. THank you: Balazs --------------------------------------- mdr.table.5fu=read.table(?5FU.txt?, header=FALSE, as.is=TRUE) mdr.table.cisplatin=read.table(?cisplatin.txt?, header=FALSE, as.is=TRUE) mdr.table.cyclo=read.table(?cyclophosmphamid.txt?, header=FALSE, as.is=TRUE) mdr.list <- list(fu=mdr.table.5fu, cisplatin=mdr.table.cisplatin, cyclophosphamid=mdr.table.cyclo) mdr.compared<-ontoCompare(mdr.list, probeType ="hgu133a", method = "TIDS", plot = TRUE)
ADD COMMENTlink modified 13.0 years ago by Paquet, Agnes500 • written 13.0 years ago by Dr Gyorffy Balazs320
0
gravatar for Paquet, Agnes
13.0 years ago by
Paquet, Agnes500
Paquet, Agnes500 wrote:
Dear Balazs, This error arises when you pass a vector or a list of vectors as argument to ontoCompare or if the probeType argument doesn't match your data type. OntoCompare is expecting a list or a list of lists, so changing your mdr.list into a list of lists may solve the problem. The probeType argument can be an affy chip or operon (for arrays with Operon oligos). Regards, Agnes -----Original Message----- From: Dr_Gyorffy_Balazs [mailto:zsalab2@yahoo.com] Sent: Monday, August 09, 2004 5:53 AM To: bioconductor@stat.math.ethz.ch Subject: [BioC] GOtools: argument is of length zero Hi all, I have tried to use the GOtools package, but I have encountered following problem after running the ontoCompare command: [1] "Starting ontoCompare..." Error in if (ncol(results) == 0) results <- NA : argument is of length zero What is the reason for this? My original script is pasted below. THank you: Balazs --------------------------------------- mdr.table.5fu=read.table(?5FU.txt?, header=FALSE, as.is=TRUE) mdr.table.cisplatin=read.table(?cisplatin.txt?, header=FALSE, as.is=TRUE) mdr.table.cyclo=read.table(?cyclophosmphamid.txt?, header=FALSE, as.is=TRUE) mdr.list <- list(fu=mdr.table.5fu, cisplatin=mdr.table.cisplatin, cyclophosphamid=mdr.table.cyclo) mdr.compared<-ontoCompare(mdr.list, probeType ="hgu133a", method = "TIDS", plot = TRUE) _______________________________________________ Bioconductor mailing list Bioconductor@stat.math.ethz.ch https://www.stat.math.ethz.ch/mailman/listinfo/bioconductor
ADD COMMENTlink written 13.0 years ago by Paquet, Agnes500
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.2.0
Traffic: 158 users visited in the last hour