Entering edit mode
Dear all,
The new Ensembl marts for release 74 are live on www.ensembl.org.
You can change your host to access our most recent data:
mart <- useMart(biomart="ENSEMBL_MART_ENSEMBL",
host="www.ensembl.org", path="/biomart/martservice")
Ensembl Genes 74
Updated human assembly to GRCh37.p13, mouse assembly to
GRCm38.p2 and armadillo assembly to Dasnov3.0.
Added new species cave fish (Astyanax mexicanus), sheep (Ovis
aries) and spotted gar (Lepisosteus oculatus)
Added a new "Phenotype" filter section and new phenotype
attributes in the GENE section
Replacement of the "possible orthologs" filter and attribute
sections by new "Orthology confidence" in the orthologs attribute
section and "Paralogy confidence" in the paralogs section. Definition
for these two attributes can be found at the following location: http:
//www.ensembl.org/info/genome/compara/homology_method.html#homology_ty
pes
Added "Phase", "cDNA coding start", "cDNA coding end",
"Genomic coding start" and "Genomic coding end" in the sequence
attribute section
Ensembl Variation 74
Updated the human somatic variation database to COSMIC 67 data
Added a new "UCSC ID" and "Digital Object Identifier"
attribute in the Variation citation section
Added Phenotype filters and attributes in the Human structural
variation and Human structural variation somatic datasets.
Added new variation species sheep (Ovis aries)
A complete list of the changes in release 74 can be found at
http://www.ensembl.org/info/website/news.html
Best Regards,
Thomas
--
Thomas Maurel
Bioinformatician - Ensembl Production Team
European Bioinformatics Institute (EMBL-EBI)
European Molecular Biology Laboratory
Wellcome Trust Genome Campus
Hinxton
Cambridge CB10 1SD
United Kingdom
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