how to build an annotation data package
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@szhanuoguelphca-892
Last seen 9.6 years ago
Hello, bioconductor experts, Is an annotation data package for the chip: ath11221501(arabidopsis)available now? I have not found at meta data section. I want to built it using AnnBuilder package. But instruction in "how to use AnnBuilder" stated that parameter of function ABPkgBuilder:organism now only can be "human", 'mouse", or "rat". This means that I can not use arabidopsis instead, right? Thanks a lot. Josh
Annotation Annotation • 820 views
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John Zhang ★ 2.9k
@john-zhang-6
Last seen 9.6 years ago
>Hello, bioconductor experts, >Is an annotation data package for the chip: ath11221501(arabidopsis)available >now? I have not found at meta data section. I want to built it using AnnBuilder >package. But instruction in "how to use AnnBuilder" stated that parameter of >function ABPkgBuilder:organism now only can be "human", 'mouse", or "rat". This >means that I can not use arabidopsis instead, right? >Thanks a lot. Yes, AnnBuilder currently only builds annotation packages for human, mouse, and rat. I am trying to make it to work for other species right now and will have the new version available when it is ready. >Josh > >_______________________________________________ >Bioconductor mailing list >Bioconductor@stat.math.ethz.ch >https://stat.ethz.ch/mailman/listinfo/bioconductor Jianhua Zhang Department of Biostatistics Dana-Farber Cancer Institute 44 Binney Street Boston, MA 02115-6084
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