Question: goTools and plot and go group names
0
gravatar for Dr Gyorffy Balazs
15.2 years ago by
Dr Gyorffy Balazs320 wrote:
Hi all, I have used goTools to produce graph for gene lists and the various GO groups. However, on the x-axis of the plot the GO groups are not always visible (as in the goTools.pdf file Figure 1.a.). How can I make the groups visible on the plot? Thank you Balazs
go graph gotools • 541 views
ADD COMMENTlink modified 15.2 years ago by Paquet, Agnes500 • written 15.2 years ago by Dr Gyorffy Balazs320
Answer: goTools and plot and go group names
0
gravatar for S Peri
15.2 years ago by
S Peri320
S Peri320 wrote:
Hi all, I am writing a T-test function for my hguav2 chip analsys. I get the Error in t.test.default(xrow[cl == 0], xrow[cl == 1]) : not enough x observations . error. What is wrong? can any one please suggest some solution. Thank you. PS >t.fx <- function(x,cl){ + ttest2 <- function(xrow,cl){ + return(t.test(xrow[cl==0],xrow[cl==1])$p.value)} + return(apply(x,1,ttest2,cl==cl))} > pros.pvals <- t.fx(pro.exprs,prostate.cl) Error in t.test.default(xrow[cl == 0], xrow[cl == 1]) : not enough x observations
ADD COMMENTlink written 15.2 years ago by S Peri320
Answer: goTools and plot and go group names
0
gravatar for Paquet, Agnes
15.2 years ago by
Paquet, Agnes500
Paquet, Agnes500 wrote:
Hi Balazs, You can change the default layout parameters using par. To have more space for the x-axis, you can for example modify the margin size and use a smaller font: res <- ontoCompare(...) par(mar=c(10,5,2,5), cex=0.7) ontoPlot(res) Regards, Agnes -----Original Message----- From: Dr_Gyorffy_Balazs [mailto:zsalab2@yahoo.com] Sent: Thursday, August 26, 2004 6:51 AM To: bioconductor@stat.math.ethz.ch Subject: [BioC] goTools and plot and go group names Hi all, I have used goTools to produce graph for gene lists and the various GO groups. However, on the x-axis of the plot the GO groups are not always visible (as in the goTools.pdf file Figure 1.a.). How can I make the groups visible on the plot? Thank you Balazs _______________________________________________ Bioconductor mailing list Bioconductor@stat.math.ethz.ch https://stat.ethz.ch/mailman/listinfo/bioconductor
ADD COMMENTlink written 15.2 years ago by Paquet, Agnes500
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 181 users visited in the last hour