Question: Errors w/ getBioC()
gravatar for Matthew  Hannah
15.3 years ago by
Matthew Hannah940 wrote:
I'm getting an error with R 2.0 devel, trying to install bioC devel. See below. It worked when I updated about a month ago but I tried last week and it didn't work, and again today, is there a problem at the moment? Cheers, Matt > source("") > > getBioC(develOK=TRUE) Running getBioC version 1.2.64.... If you encounter problems, first make sure that you are running the latest version of getBioC() which can be found at: Please direct any concerns or questions to [1] "Installing reposTools ..." Loading required package: reposTools Error in getBioC(develOK = TRUE) : default: targets affy, cdna and exprs. exprs: packages Biobase, annotate, genefilter, geneploter, edd, ROC, multtest, pamr vsn, and limma. affy: packages affy, affydata, annaffy, affyPLM, makecdfenv, and matchprobes plus 'exprs'. cdna: packages marray, vsn, plus 'exprs'. prog: packages graph, hexbin, externalVector. graph: packages graph, Rgraphviz, RBGL widgets: packages tkWidgets, widgetTools, DynDoc. design: packages daMA and factDesign externalData: packages externalVector and rhdf5. database: AnnBuilder, SAGElyzer, Rdbi and RdbiPgSQL. analyses: packages Biobase, ctc, daMA, edd, factDesign, genefilter, geneplotter, globaltest, gpls, limma, RMAGEML, multtest, pamr, wvalue, ROC, siggenes and splicegear. annotation: packages annotate, AnnBuilder, humanLLMappings KEGG, GO, SNPtools, makecdfenv and ontoTools. proteomics: packages gpls, PROcess and apComplex. arrayCGH: packages aCGH, DNAcopy, repeated, and rmutil. all: All of the Bio >
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