WGCNA package
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@amit-kumar-subudhi-6098
Last seen 7.1 years ago
Hi, I am using WGCNA for gene expression based network construction and module detection. There are 18 modules present in my network but could not identify the module colors. Can it be possible to get the different colors assigned to each module? I think the knowledge of module colors is necessary for exporting the gene network and modules. With best regards Amit -- Amit Kumar Subudhi Research Scholar, CSIR-Senior Research Fellow, Molecular Parasitology and Systems Biology Lab, Department of Biological Sciences , FD III, BITS, Pilani, Rajasthan- 333031 e mail- amit4help@gmail.com amit.subudhi@pilani.bits-pilani.ac.in Mob No- 919983525845 [[alternative HTML version deleted]]
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@james-w-macdonald-5106
Last seen 3 hours ago
United States
Hi Amit, WGCNA isn't a Bioc package - it's on CRAN. You should post your question there, and make sure you cc the maintainer. Best, Jim On Tuesday, April 08, 2014 3:31:12 AM, amit kumar subudhi wrote: > Hi, > > I am using WGCNA for gene expression based network construction and module > detection. There are 18 modules present in my network but could not > identify the module colors. Can it be possible to get the different colors > assigned to each module? > > I think the knowledge of module colors is necessary for exporting the gene > network and modules. > > With best regards > Amit > -- James W. MacDonald, M.S. Biostatistician University of Washington Environmental and Occupational Health Sciences 4225 Roosevelt Way NE, # 100 Seattle WA 98105-6099
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@peter-langfelder-4469
Last seen 13 months ago
United States
Hi Amit, no need to CC the maintainer separately. Are your modules labeled by numbers? Numbers are just as good labels as colors. If you want to get colors from the labels, use the function labels2colors. Hope this helps, Peter On Tue, Apr 8, 2014 at 12:31 AM, amit kumar subudhi <amit4help at="" gmail.com=""> wrote: > Hi, > > I am using WGCNA for gene expression based network construction and module > detection. There are 18 modules present in my network but could not > identify the module colors. Can it be possible to get the different colors > assigned to each module? > > I think the knowledge of module colors is necessary for exporting the gene > network and modules. > > With best regards > Amit > > -- > Amit Kumar Subudhi > Research Scholar, > CSIR-Senior Research Fellow, > Molecular Parasitology and Systems Biology Lab, > Department of Biological Sciences , > FD III, BITS, Pilani, > Rajasthan- 333031 > e mail- > amit4help at gmail.com > amit.subudhi at pilani.bits-pilani.ac.in > Mob No- 919983525845 > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioconductor mailing list > Bioconductor at r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor
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