Hi, The problem has been solved. Thank you very much! Sincerely, GUAN 2014-04-21 16:08 GMT+08:00 Hervé Pagès <hpages@fhcrc.org>: > On 04/21/2014 12:34 AM, 管锐 wrote: > >> Hi, >> > > Hi, > > Please use the "Reply All" button so the discussion stays on the mailing > list. Thanks! > > > The IRanges I installed is version 1.22.2, the XVector depends IRanges >> >1.21.25. >> Because the cluster computer is unable to connect to Internet, I used >> the command "R CMD INSTALL XVctor" to install the packges. >> > > If you must absolutely use 'R CMD INSTALL' to install packages, you > should do it on the package source tarballs, not on the source tree. > The source tree can contain stalled .o or .so files that will only > cause problems. So: > > R CMD INSTALL IRanges_1.22.3.tar.gz > R CMD INSTALL XVector_0.4.0.tar.gz > > in *that* order. > > Cheers, > H. > > > And I have checked the LD_LIBRARY_PATH. >> Thanks! >> >> Sincerely, >> GUAN >> >> >> >> 2014-04-21 13:33 GMT+08:00 Hervé Pagès <hpages@fhcrc.org>> <mailto:hpages@fhcrc.org>>: >> >> >> Hi, >> >> >> On 04/20/2014 08:29 PM, GUAN Rui [guest] wrote: >> >> Error in dyn.load(file, DLLpath = DLLpath, ...) : >> unable to load shared object >> '/guanrui/soft/R-3.1.0/__library/XVector/libs/XVector.__so': >> /guanrui/soft/R-3.1.0/library/__XVector/libs/XVector.so: >> >> undefined symbol: hold_IRanges >> Error: loading failed >> Execution halted >> ERROR: loading failed" >> >> >> How are you trying to install this? Are you sure your version of >> IRanges >> is current? >> >> Always use biocLite() to install Bioconductor packages. >> See http://bioconductor.org/__install/ >> >> <http: bioconductor.org="" install=""/> >> >> Cheers, >> H. >> >> >> >> -- output of sessionInfo(): >> >> R version 3.1.0 (2014-04-10) >> Platform: x86_64-unknown-linux-gnu (64-bit) >> >> locale: >> [1] LC_CTYPE=en_US.iso885915 LC_NUMERIC=C >> [3] LC_TIME=en_US.iso885915 LC_COLLATE=en_US.iso885915 >> [5] LC_MONETARY=en_US.iso885915 LC_MESSAGES=en_US.iso885915 >> [7] LC_PAPER=en_US.iso885915 LC_NAME=C >> [9] LC_ADDRESS=C LC_TELEPHONE=C >> [11] LC_MEASUREMENT=en_US.iso885915 LC_IDENTIFICATION=C >> >> attached base packages: >> [1] stats graphics grDevices utils datasets methods >> base >> >> >> -- >> Sent via the guest posting facility at bioconductor.org >> <http: bioconductor.org="">. >> >> >> >> -- >> Hervé Pagès >> >> Program in Computational Biology >> Division of Public Health Sciences >> Fred Hutchinson Cancer Research Center >> 1100 Fairview Ave. N, M1-B514 >> P.O. Box 19024 >> Seattle, WA 98109-1024 >> >> E-mail: hpages@fhcrc.org <mailto:hpages@fhcrc.org> >> >> Phone: (206) 667-5791 >> Fax: (206) 667-1319 >> >> >> > -- > Hervé Pagès > > Program in Computational Biology > Division of Public Health Sciences > Fred Hutchinson Cancer Research Center > 1100 Fairview Ave. N, M1-B514 > P.O. Box 19024 > Seattle, WA 98109-1024 > > E-mail: hpages@fhcrc.org > Phone: (206) 667-5791 > Fax: (206) 667-1319 > [[alternative HTML version deleted]]