Question: Installation of SomaticSignatures
4.4 years ago by
Guest User • 12k
Guest User • 12k wrote:
Hi, I am trying to install the SomaticSignatures using R version 3.1.0. There seems to be a problem with the dependency on NMF: > biocLite("SomaticSignatures") BioC_mirror: http://bioconductor.org Using Bioconductor version 2.14 (BiocInstaller 1.14.2), R version 3.1.0. Installing package(s) 'SomaticSignatures' Warning: dependency 'NMF' is not available trying URL 'http://bioconductor.org/packages/2.14/bioc/bin/macosx/mave ricks/contrib/3.1/SomaticSignatures_1.0.0.tgz' Content type 'application/x-gzip' length 1712756 bytes (1.6 Mb) opened URL ================================================== downloaded 1.6 Mb The downloaded binary packages are in /var/folders/kw/sbc71xm12cz18s24f1mvrzd00000gq/T//RtmpuB97PY/d ownloaded_packages Warning message: installed directory not writable, cannot update packages 'MASS' library(SomaticSignatures) Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : there is no package called 'NMF' Error: package or namespace load failed for 'SomaticSignatures' -- output of sessionInfo(): R version 3.1.0 (2014-04-10) Platform: x86_64-apple-darwin13.1.0 (64-bit) locale:  C attached base packages:  stats graphics grDevices utils datasets methods base loaded via a namespace (and not attached):  tools_3.1.0 -- Sent via the guest posting facility at bioconductor.org.
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