Error in Views method c()
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@michael-dondrup-6615
Last seen 10.5 years ago
I am trying to use function c() to combine two Views, but get an error. > library(XVector) > v= Views(1:10,1,2) > c(v, v) Error in unclass(target) : cannot unclass an external pointer > dna = DNAString("ACTGCA") > v = Views(dna, IRanges(1, 2:5)) > c(v,v) Error in unclass(target) : cannot unclass an external pointer My report was triggered by this post https://www.biostars.org/p/103854/ Best Michael > sessionInfo() R version 3.1.0 (2014-04-10) Platform: x86_64-apple-darwin10.8.0 (64-bit) locale: [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8 attached base packages: [1] parallel stats graphics grDevices utils datasets methods base other attached packages: [1] Biostrings_2.32.0 XVector_0.4.0 IRanges_1.22.9 BiocGenerics_0.10.0 loaded via a namespace (and not attached): [1] splines_3.1.0 stats4_3.1.0 tools_3.1.0 zlibbioc_1.10.0 Michael Dondrup Postdoctoral fellow Sea Lice Research Centre/Department of Informatics University of Bergen Thorm?hlensgate 55, N-5008 Bergen, Norway
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@herve-pages-1542
Last seen 9 days ago
Seattle, WA, United States
Will fix. Thanks Michael. H. On 06/17/2014 09:32 PM, Michael Dondrup wrote: > I am trying to use function c() to combine two Views, but get an error. > >> library(XVector) >> v= Views(1:10,1,2) >> c(v, v) > Error in unclass(target) : cannot unclass an external pointer > >> dna = DNAString("ACTGCA") >> v = Views(dna, IRanges(1, 2:5)) >> c(v,v) > Error in unclass(target) : cannot unclass an external pointer > > > My report was triggered by this post https://www.biostars.org/p/103854/ > > Best > Michael > > >> sessionInfo() > R version 3.1.0 (2014-04-10) > Platform: x86_64-apple-darwin10.8.0 (64-bit) > > locale: > [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8 > > attached base packages: > [1] parallel stats graphics grDevices utils datasets methods base > > other attached packages: > [1] Biostrings_2.32.0 XVector_0.4.0 IRanges_1.22.9 BiocGenerics_0.10.0 > > loaded via a namespace (and not attached): > [1] splines_3.1.0 stats4_3.1.0 tools_3.1.0 zlibbioc_1.10.0 > > > > > Michael Dondrup > Postdoctoral fellow > Sea Lice Research Centre/Department of Informatics > University of Bergen > Thorm?hlensgate 55, N-5008 Bergen, > Norway > > _______________________________________________ > Bioconductor mailing list > Bioconductor at r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor > -- Hervé Pagès Program in Computational Biology Division of Public Health Sciences Fred Hutchinson Cancer Research Center 1100 Fairview Ave. N, M1-B514 P.O. Box 19024 Seattle, WA 98109-1024 E-mail: hpages at fhcrc.org Phone: (206) 667-5791 Fax: (206) 667-1319
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