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Currently, the GenomeInfoDb does not support Mus musculus. How can I
make it available for my local installation? It would be great if it
somebody can make it available in the GenomeInfoDb package. I prepared
the genes_species.txt file:
circular auto sex NCBI UCSC
F T F 1 chr1
F T F 2 chr2
F T F 3 chr3
F T F 4 chr4
F T F 5 chr5
F T F 6 chr6
F T F 7 chr7
F T F 8 chr8
F T F 9 chr9
F T F 10 chr10
F T F 11 chr11
F T F 12 chr12
F T F 13 chr13
F T F 14 chr14
F T F 15 chr15
F T F 16 chr16
F T F 17 chr17
F T F 18 chr18
F T F 19 chr19
F F T X chrX
F F T Y chrY
T F F MT chrM
-- output of sessionInfo():
R version 3.1.0 (2014-04-10)
Platform: x86_64-pc-linux-gnu (64-bit)
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
[5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
[7] LC_PAPER=en_US.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
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