Question: Can Rank-production be applied to test the condition's effects on treatments?
5.3 years ago by
Guest User • 12k
Guest User • 12k wrote:
Dear R helpers, I'm studying the effects of different conditions on the same treatment. Similar to the following example, Condition A --- Control(Ca)(4 samples) VS Treatment(Ta)(4 samples) Condition B --- Control(Cb)(3 samples) VS Treatment(Tb)(4 samples) The control and treatment procedures in both conditions are the same, and I want to test the effects of conditions on treatment result, the differentially expressed genes acquired from (Ta-Ca) VS (Tb-Cb) with FDR<0.05 Would you please clarify me if it is possible to use RankProd for such question? Thank you very much in advances for your kind suggestions. With Respects, Kaj -- output of sessionInfo(): R version 3.1.0 (2014-04-10) Platform: x86_64-pc-linux-gnu (64-bit) locale:  LC_CTYPE=en_GB.UTF-8 LC_NUMERIC=C  LC_TIME=en_GB.UTF-8 LC_COLLATE=en_GB.UTF-8  LC_MONETARY=en_GB.UTF-8 LC_MESSAGES=en_GB.UTF-8  LC_PAPER=en_GB.UTF-8 LC_NAME=C  LC_ADDRESS=C LC_TELEPHONE=C  LC_MEASUREMENT=en_GB.UTF-8 LC_IDENTIFICATION=C attached base packages:  stats graphics grDevices utils datasets methods base other attached packages:  RankProd_2.36.0 loaded via a namespace (and not attached):  tools_3.1.0 -- Sent via the guest posting facility at bioconductor.org.
ADD COMMENT • link •