Question: WGCNA: labeledHeatmap and verboseScatterplot correlations and p-values are not the same
3.5 years ago by
Sindre • 60
Sindre • 60 wrote:
Hello! I have used the WGCNA package and found 2 modules which are of interest for me. I picked out from the labeledHeatmap (which related the module eigengene with clinical traits). I then selected the modules (one at a time) and ran the verboseScatterplot function. For one module its correlation was 0.51, p = 0.01 in labeledHeatmap, but 0.27, p<0.0001 in the verboseScatterplot. How can this be? Thank you.
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