>> library(reposTools)
>Loading required package: tools
>> install.packages2("GO", develOK = TRUE)
>Note: You did not specify a download type. Using a default value of:
Win32
>This will be fine for almost all users
Sorry, we were only able build the GO package under 2.0.0 for unix but
not for
Windows yet. You may try using a unix machine or wait until next week
when our
CVS is back.
>
>[1] "Attempting to download GO from
http://www.bioconductor.org/data/metaData-devel/"
>[1] "Download complete."
>[1] "Installing GO"
>Note: Running R version 2.0.0 and package GO was built for R version
1.9.0
> , installing anyway.
>
>[1] "Installation complete"
>>From URL:
http://www.bioconductor.org/data/metaData-devel/
> GO version 1.6.2
>
>> library(annaffy)
>Loading required package: Biobase
>Welcome to Bioconductor
> Vignettes contain introductory material. To view,
> simply type: openVignette()
> For details on reading vignettes, see
> the openVignette help page.
>Error: package 'GO' required by 'annaffy' could not be found
>> local({pkg <- select.list(sort(.packages(all.available = TRUE)))
>+ if(nchar(pkg)) library(pkg, character.only=TRUE)})
>Error in library(pkg, character.only = TRUE) :
> 'GO' is not a valid package -- installed < 2.0.0?
>
>Not usre what to try next.
>
>Thanks very much,
>Dick
>
>*********************************************************************
**********
>Richard P. Beyer, Ph.D. University of Washington
>Tel.:(206) 616 7378 Env. & Occ. Health Sci. , Box 354695
>Fax: (206) 685 4696 4225 Roosevelt Way NE, # 100
> Seattle, WA 98105-6099
>
http://depts.washington.edu/ceeh/ServiceCores/FC5/FC5.html
>*********************************************************************
**********
>
>On Fri, 24 Sep 2004, John Zhang wrote:
>
>>
>>> but it was built in 1.9.0, so I can't load it in 2.0.0beta. Would
someone
>> please build GO for R2.0.0?
>>
>> Now, if you do
>>
>>> library(reposTools)
>>> install.packages2("GO", develOK = TRUE)
>>
>> you will get the devel GO package built under R 2.0.0. The package
still has
a
>> version number 1.6.2 but the GOTERM environment is a list of lists
rather
than a
>> list of GOTerms objects as it was before (we could not change the
version
number
>> due to a problem with our CVS). The reason for having a list of
lists is to
save
>> space as the data packages are getting bigger and bigger.
>>
>>>
>>> I am trying to use annaffy for the affy mouse4302 chip, but the
mouse4302
meta
>> data is only for R2.0.0. So I think I am stuck.
>>>
>>> Thanks very much,
>>> Dick
>>>
**********************************************************************
*********
>>> Richard P. Beyer, Ph.D. University of Washington
>>> Tel.:(206) 616 7378 Env. & Occ. Health Sci. , Box 354695
>>> Fax: (206) 685 4696 4225 Roosevelt Way NE, # 100
>>> Seattle, WA 98105-6099
>>>
http://depts.washington.edu/ceeh/ServiceCores/FC5/FC5.html
>>>
>>> _______________________________________________
>>> Bioconductor mailing list
>>> Bioconductor@stat.math.ethz.ch
>>>
https://stat.ethz.ch/mailman/listinfo/bioconductor
>>
>> Jianhua Zhang
>> Department of Biostatistics
>> Dana-Farber Cancer Institute
>> 44 Binney Street
>> Boston, MA 02115-6084
>>
>>
>
Jianhua Zhang
Department of Biostatistics
Dana-Farber Cancer Institute
44 Binney Street
Boston, MA 02115-6084
