Package for iScan methylation data
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Brian Smith ▴ 120
@brian-smith-6197
Last seen 10 months ago
United States

Hi,

Is there a bioconductor package that can read in and analyze methylation data from an illumina iScan scanner? I have the raw data...

 

thanks!

methylation iscan • 743 views
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Thanks for your help!

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@james-w-macdonald-5106
Last seen 30 minutes ago
United States

If you mean the Idat files, then yes. The methylumi (http://bioconductor.org/packages/release/bioc/html/methylumi.html) package can read those data in. There are other packages like minfi that can also use the Idat files (by depending on functions in methylumi).

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