Question: Package for iScan methylation data
0
gravatar for Brian Smith
4.8 years ago by
Brian Smith120
United States
Brian Smith120 wrote:

Hi,

Is there a bioconductor package that can read in and analyze methylation data from an illumina iScan scanner? I have the raw data...

 

thanks!

methylation iscan • 644 views
ADD COMMENTlink modified 4.8 years ago • written 4.8 years ago by Brian Smith120

Thanks for your help!

ADD REPLYlink written 4.8 years ago by Brian Smith120
Answer: Package for iScan methylation data
2
gravatar for James W. MacDonald
4.8 years ago by
United States
James W. MacDonald50k wrote:

If you mean the Idat files, then yes. The methylumi (http://bioconductor.org/packages/release/bioc/html/methylumi.html) package can read those data in. There are other packages like minfi that can also use the Idat files (by depending on functions in methylumi).

ADD COMMENTlink written 4.8 years ago by James W. MacDonald50k
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