Hi there,

I'm running linear regressions between imputed SNPs and a phenotype of interest. Here's my command:

res1<-snp.rhs.estimates(formula=as.formula(paste(trait, "~1")), family="gaussian", data=pheno, snp.data=genotypes, unertain=TRUE)

However, I'm just not sure about what the difference between the 'trait' and 'phenotype' object is...

Any tips/help on this would be great.

Thanks so much.