Showing : snpStats • reset
1
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Error in ld(): STRING_ELT() can only be applied to a 'character vector', not a 'NULL'
ld() snpStats
4.2 years ago Anastasiia • 0
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0
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1.2k
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Extract flanking sequences SNP without reference genome
SNPData snpStats SNP flankingsequences
4.9 years ago Amber • 0
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0
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1.1k
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Coercion of a numeric matrix into a SnpMatrix
snpStats
6.0 years ago schandry • 0
0
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1
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1.4k
views
GWAS: access Imputation probabilities: snpStats
gwas snpstats GWAS Imputation snpStats
7.6 years ago GENOMIC_region • 0
1
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1
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1.7k
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reading ped error when using the snpStats library
snpstats ped file R
8.3 years ago kzelaya2 ▴ 10
0
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1.5k
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snp.rhs.estimates and/or .tests and extracting results
snpStats additive model
8.9 years ago natalie.jean.mcdonald • 0
1
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0
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1.5k
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Error when computing ld with snpStats in big samples
software error snpstats `ld
9.7 years ago carlos.ruiz • 0
1
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1
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2.1k
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Write the "map" DataFrame from genotypeToSnpMatrix() to a text file
variantannotation DataFrame snpstats
10.2 years ago TimothéeFlutre ▴ 80
1
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2
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2.5k
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Automatic NA values generated by the ld() function of snpStats package
snpStats BioConductor LD Linkage Disequilibrium NA
11.0 years ago remi.tournebize ▴ 10
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1.6k
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snp analysis GWAS
snpstats
updated 11.2 years ago by ★ 13k • written 11.2 years ago by • 0
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2.1k
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(snpStats) Error: Error in terms.formula(formula, special, data = data) : invalid term in model formula
software error snpStats
11.2 years ago vickygarfield87 • 0
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1.3k
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Are the 'trait' and 'phenotype' objects in the snpStats snp.rhs.estimates command the same thing?
snpStats
11.3 years ago vickygarfield87 • 0
0
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1
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2.2k
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snpStats reference allele used in genetic associations?
SNP Category snpStats SNP Category snpStats
updated 11.7 years ago by 6.7k • written 11.7 years ago by ★ 13k
0
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3
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2.2k
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Error reading imputed file using snpStats package
SNP snpStats SNP snpStats
updated 12.0 years ago by 6.7k • written 12.0 years ago by ▴ 50
0
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1
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2.1k
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[R] freetype 2.5.2, problem with the survival package, build R 2.15.x with gcc 4.8.x
Regression Survival snpStats Regression Survival snpStats
12.2 years ago David Winsemius ▴ 40
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2.4k
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Plink Data for Fst Calculations
snpStats snpStats
12.2 years ago Voke AO ▴ 760
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3
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1.5k
views
SNPstats package bug report
snpStats snpStats
12.2 years ago Guest User ★ 13k
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0
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2.3k
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snpStats/GWASTools conversion
cdf convert snpMatrix snpStats GWASTools cdf convert snpMatrix snpStats GWASTools
12.4 years ago Stephanie M. Gogarten ▴ 890
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0
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1.4k
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snpStats Fst Implementation
snpStats snpStats
12.4 years ago Voke AO ▴ 760
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1
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1.8k
views
col.summary error in snpStats
SNP Sequencing Annotation snpMatrix snpStats SNP Sequencing Annotation snpMatrix snpStats
updated 12.9 years ago by 6.7k • written 12.9 years ago by ▴ 10
0
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1
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1.7k
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snpStats --- MAF in Pedigrees
snpStats snpStats
updated 13.1 years ago by 6.7k • written 13.1 years ago by ▴ 60
0
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0
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1.3k
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statistics from snpStats objects
SNP snpStats SNP snpStats
13.7 years ago james power ▴ 10
0
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3
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3.7k
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GWAS with Affymetrix SNP 6.0
SNP oligo snpMatrix snpStats SNP oligo snpMatrix snpStats
updated 13.7 years ago by 6.7k • written 13.7 years ago by ▴ 20
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4
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2.2k
views
snpStats, read.long, alleles in two columns
SNP Genetics snpStats SNP Genetics snpStats
updated 13.9 years ago by ▴ 20 • written 13.9 years ago by ▴ 30
0
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2
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1.9k
views
Weird error when installing VariantAnnotation and/or snpStats (whether from SVN or using biocLite)
snpStats snpStats
updated 14.3 years ago by 25k • written 14.3 years ago by ★ 4.2k
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Comment: Postdoctoral Fellow (Computational Biology / Bioinformatics) - Neuroepigenetics by mudasarnaeem2020 • 0
Promoting UDISE+ Features on Social Media to Increase Awareness https://udisseplus.com/[enter link description here][1] [1]: https://ud…
Comment: DiffBind plot.profile error by a2sahaaaq2c • 0
To resolve technical errors like installation failures or login issues, first ensure your device allows in the security settings and that…
Comment: soGGi error by shepherl 4.3k
We have tried to contact the soGGi maintainer to have them update the package to the newer version of gglot2 but they have so far been unre…
Comment: using limma trend workflow in CAMERA by Gordon Smyth 53k
No, `trend.var=TRUE` and `trend=TRUE` are not needed in any voom pipeline, because the trend is already incorporated into the voom weights.
Comment: Questions about bacon QC and correction on EWAS results by Tikaaa2sahaaaq2c • 0
In the world of mobile games, the 88ef game download has gained traction for its performance driven design [free download][1], similar to …
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Answer: DiffBind differential analysis
Answer: Limma-voom sample weights and impact on DEG numbers
C: Why limma, edgeR, and DESeq did not implement fold change moderation first?
Comment: using limma trend workflow in CAMERA
C: z-score with DESeq2?
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