Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
snpStats
•
reset
1
vote
2
replies
1.3k
views
Error in ld(): STRING_ELT() can only be applied to a 'character vector', not a 'NULL'
ld()
snpStats
2.4 years ago
Anastasiia
• 0
0
votes
0
replies
720
views
Extract flanking sequences SNP without reference genome
SNPData
snpStats
SNP
flankingsequences
3.0 years ago
Amber
• 0
0
votes
0
replies
598
views
Coercion of a numeric matrix into a SnpMatrix
snpStats
4.2 years ago
schandry
• 0
0
votes
1
reply
922
views
GWAS: access Imputation probabilities: snpStats
gwas
snpstats
GWAS
Imputation
snpStats
5.8 years ago
GENOMIC_region
• 0
1
vote
1
reply
1.2k
views
reading ped error when using the snpStats library
snpstats
ped file
R
6.5 years ago
kzelaya2
▴ 10
0
votes
0
replies
1.0k
views
snp.rhs.estimates and/or .tests and extracting results
snpStats
additive model
7.1 years ago
natalie.jean.mcdonald
• 0
1
vote
0
replies
1.0k
views
Error when computing ld with snpStats in big samples
software error
snpstats
`ld
7.9 years ago
carlos.ruiz
• 0
1
vote
1
reply
1.6k
views
Write the "map" DataFrame from genotypeToSnpMatrix() to a text file
variantannotation
DataFrame
snpstats
8.4 years ago
TimothéeFlutre
▴ 80
1
vote
2
replies
1.8k
views
Automatic NA values generated by the ld() function of snpStats package
snpStats
BioConductor
LD
Linkage Disequilibrium
NA
9.2 years ago
remi.tournebize
▴ 10
0
votes
1
reply
1.3k
views
snp analysis GWAS
snpstats
updated 9.4 years ago by
Steve Lianoglou
★ 13k • written 9.4 years ago by
ahmadamareen1985
• 0
0
votes
0
replies
1.7k
views
(snpStats) Error: Error in terms.formula(formula, special, data = data) : invalid term in model formula
software error
snpStats
9.4 years ago
vickygarfield87
• 0
0
votes
0
replies
995
views
Are the 'trait' and 'phenotype' objects in the snpStats snp.rhs.estimates command the same thing?
snpStats
9.5 years ago
vickygarfield87
• 0
0
votes
1
reply
1.6k
views
snpStats reference allele used in genetic associations?
SNP
Category
snpStats
SNP
Category
snpStats
updated 9.9 years ago by
Vincent J. Carey, Jr.
6.7k • written 9.9 years ago by
Guest User
★ 13k
0
votes
3
replies
1.6k
views
Error reading imputed file using snpStats package
SNP
snpStats
SNP
snpStats
updated 10.2 years ago by
Vincent J. Carey, Jr.
6.7k • written 10.2 years ago by
francesca casalino
▴ 50
0
votes
1
reply
1.6k
views
[R] freetype 2.5.2, problem with the survival package, build R 2.15.x with gcc 4.8.x
Regression
Survival
snpStats
Regression
Survival
snpStats
10.4 years ago
David Winsemius
▴ 40
0
votes
0
replies
2.0k
views
Plink Data for Fst Calculations
snpStats
snpStats
10.4 years ago
Voke AO
▴ 760
0
votes
3
replies
1.1k
views
SNPstats package bug report
snpStats
snpStats
10.4 years ago
Guest User
★ 13k
0
votes
0
replies
1.8k
views
snpStats/GWASTools conversion
cdf
convert
snpMatrix
snpStats
GWASTools
cdf
convert
snpMatrix
snpStats
GWASTools
10.5 years ago
Stephanie M. Gogarten
▴ 870
0
votes
0
replies
1.1k
views
snpStats Fst Implementation
snpStats
snpStats
10.6 years ago
Voke AO
▴ 760
0
votes
1
reply
1.4k
views
col.summary error in snpStats
SNP
Sequencing
Annotation
snpMatrix
snpStats
SNP
Sequencing
Annotation
snpMatrix
snpStats
updated 11.1 years ago by
Vincent J. Carey, Jr.
6.7k • written 11.1 years ago by
Tereza Jezkova - personal
▴ 10
0
votes
1
reply
1.2k
views
snpStats --- MAF in Pedigrees
snpStats
snpStats
updated 11.3 years ago by
Vincent J. Carey, Jr.
6.7k • written 11.3 years ago by
Samuel Younkin
▴ 60
0
votes
0
replies
1.0k
views
statistics from snpStats objects
SNP
snpStats
SNP
snpStats
11.9 years ago
james power
▴ 10
0
votes
3
replies
2.8k
views
GWAS with Affymetrix SNP 6.0
SNP
oligo
snpMatrix
snpStats
SNP
oligo
snpMatrix
snpStats
updated 11.9 years ago by
Vincent J. Carey, Jr.
6.7k • written 11.9 years ago by
David Hervás
▴ 20
0
votes
4
replies
1.5k
views
snpStats, read.long, alleles in two columns
SNP
Genetics
snpStats
SNP
Genetics
snpStats
updated 12.1 years ago by
David Clayton
▴ 20 • written 12.1 years ago by
Liz Hare
▴ 30
0
votes
2
replies
1.4k
views
Weird error when installing VariantAnnotation and/or snpStats (whether from SVN or using biocLite)
snpStats
snpStats
updated 12.5 years ago by
Martin Morgan
25k • written 12.5 years ago by
Tim Triche
★ 4.2k
25 results • Page
1 of 1
Recent ...
Replies
Comment: Differential peaks that were not identified in diffbind were identified in diseq
by
ATpoint
★ 4.0k
As expected normalization is **way** off, meaning in simple terms that the cloud is too high. The deep-blue area should be along y=0. Try t…
Comment: Differential peaks that were not identified in diffbind were identified in diseq
by
lonn
• 0
Thank you for your suggestions! Here is the MA plot: ![enter image description here][1] I tried several normalization methods with DiffBi…
Answer: OrgDb for maize
by
Guido Hooiveld
★ 3.9k
I notice the data you are working with is based on `ensembl` ids. This is important, because the `OrgDb` are annotation databases that are …
Comment: Theoretical WGCNA Question
by
Garrett
• 0
Thanks Peter!
Comment: FGSEA pre-ranked input in increasing order or decreasing
by
sropri
• 0
Thank you!
Votes
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
Comment: DEXSeq DEXSeqDataSet count matrix duplication
Comment: Error in champ.load(): The following specified files do not exist
Awards
• All
Popular Question
to
Gordon Smyth
50k
Scholar
to
Peter Hickey
▴ 740
Popular Question
to
sropri
• 0
Popular Question
to
W. Evan Johnson
▴ 850
Popular Question
to
Alejandro Reyes
★ 1.9k
Locations
• All
France,
4 minutes ago
Sweden,
4 minutes ago
France,
19 minutes ago
United States,
25 minutes ago
WEHI, Melbourne, Australia,
29 minutes ago
Traffic: 836 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6