install Rgraphviz and graphviz MAC OSX 10.3.5
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@ingmar-visser-958
Last seen 7.2 years ago
Hi All, I'm trying to install Rgraphviz and graphviz on my MAC with OSX 10.3.5 but I'm failing miserably so far: This is the error I get when installing graphviz (using ./configure and make from the terminal): gcc -DHAVE_CONFIG_H -I. -I. -I../../.. -I../../../lefty -I/usr/local/include -I/usr/X11R6/include -g -O2 -fno-common -Wall -DNDEBUG -MT garray.lo -MD -MP -MF .deps/garray.Tpo -c garray.c -fno-common -DPIC -o .libs/garray.o In file included from /usr/include/sys/select.h:71, from ../../../lefty/common.h:66, from garray.c:3: /usr/include/sys/event.h:68: error: parse error before "u_short" /usr/include/sys/event.h:72: error: parse error before '}' token In file included from ../../../lefty/common.h:66, from garray.c:3: /usr/include/sys/select.h:88: error: parse error before "u_int" In file included from garray.c:3: ../../../lefty/common.h:132: error: conflicting types for `panic' /usr/include/mach/mach.h:79: error: previous declaration of `panic' make[5]: *** [garray.lo] Error 1 make[4]: *** [all-recursive] Error 1 make[3]: *** [all-recursive] Error 1 make[2]: *** [all-recursive] Error 1 make[1]: *** [all-recursive] Error 1 make: *** [all] Error 2 Any tips or hints are welcome. This is graphviz version 1.16, the latest version AFAIK. thanks in advance, ingmar
Rgraphviz Rgraphviz • 673 views
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rgentleman ★ 5.5k
@rgentleman-7725
Last seen 6.5 years ago
United States
On Tue, Oct 12, 2004 at 04:50:53PM +0200, Ingmar Visser wrote: > > Hi All, > I'm trying to install Rgraphviz and graphviz on my MAC with OSX 10.3.5 > but I'm failing miserably so far: > > This is the error I get when installing graphviz (using ./configure and make > from the terminal): > > > gcc -DHAVE_CONFIG_H -I. -I. -I../../.. -I../../../lefty > -I/usr/local/include -I/usr/X11R6/include -g -O2 -fno-common -Wall -DNDEBUG > -MT garray.lo -MD -MP -MF .deps/garray.Tpo -c garray.c -fno-common -DPIC -o > .libs/garray.o > In file included from /usr/include/sys/select.h:71, > from ../../../lefty/common.h:66, > from garray.c:3: > /usr/include/sys/event.h:68: error: parse error before "u_short" > /usr/include/sys/event.h:72: error: parse error before '}' token > In file included from ../../../lefty/common.h:66, > from garray.c:3: > /usr/include/sys/select.h:88: error: parse error before "u_int" > In file included from garray.c:3: > ../../../lefty/common.h:132: error: conflicting types for `panic' > /usr/include/mach/mach.h:79: error: previous declaration of `panic' > make[5]: *** [garray.lo] Error 1 > make[4]: *** [all-recursive] Error 1 > make[3]: *** [all-recursive] Error 1 > make[2]: *** [all-recursive] Error 1 > make[1]: *** [all-recursive] Error 1 > make: *** [all] Error 2 > > Any tips or hints are welcome. > > This is graphviz version 1.16, the latest version AFAIK. And the documentation is pretty explicit that this is not supported (yet) AFAIK. And if you checked in the graphviz mailing lists you would see that 1.16 seems problematic against FreeBSD (and if you checked under the hood of 10.3.5 you would find a FreeBSD variant), so that might just explain most of it.... > > thanks in advance, ingmar > > _______________________________________________ > Bioconductor mailing list > Bioconductor@stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor -- +--------------------------------------------------------------------- ------+ | Robert Gentleman phone : (617) 632-5250 | | Associate Professor fax: (617) 632-2444 | | Department of Biostatistics office: M1B20 | | Harvard School of Public Health email: rgentlem@jimmy.harvard.edu | +--------------------------------------------------------------------- ------+
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Hi all, When building graphviz 1.12 I get the following build error: ld: multiple definitions of symbol _gdImageTrueColorToPalette ../gd/.libs/libgdconvenience.al(gd_topal.lo) definition of _gdImageTrueColorToPalette in section (__TEXT,__text) ../gd/.libs/libgdconvenience.al(gd_topal.lo) definition of _gdImageTrueColorToPalette in section (__TEXT,__text) make[3]: *** [libdotneato.la] Error 1 make[2]: *** [all-recursive] Error 1 make[1]: *** [all-recursive] Error 1 make: *** [all] Error 2 Could anyone point me to a possible solution? best, ingmar visser i.visser@uva.nl
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Why are you asking here about how to build graphviz, especially an older version? That's what the 'graphviz-interest' group is for. On Thu, 14 Oct 2004, Ingmar Visser wrote: > Hi all, > > When building graphviz 1.12 I get the following build error: > > ld: multiple definitions of symbol _gdImageTrueColorToPalette > ../gd/.libs/libgdconvenience.al(gd_topal.lo) definition of > _gdImageTrueColorToPalette in section (__TEXT,__text) > ../gd/.libs/libgdconvenience.al(gd_topal.lo) definition of > _gdImageTrueColorToPalette in section (__TEXT,__text) > make[3]: *** [libdotneato.la] Error 1 > make[2]: *** [all-recursive] Error 1 > make[1]: *** [all-recursive] Error 1 > make: *** [all] Error 2 > > Could anyone point me to a possible solution? > > best, ingmar visser > > i.visser@uva.nl > > _______________________________________________ > Bioconductor mailing list > Bioconductor@stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor >
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On 10/14/04 2:17 PM, "Jeff Gentry" <jgentry@jimmy.harvard.edu> wrote: > Why are you asking here about how to build graphviz, especially an older > version? That's what the 'graphviz-interest' group is for. Because the Rgraphviz readme advises me to build an older version of graphviz instead of the latest one. The latest version of graphviz has an excellent binary that works fine for me, but not together with Rgraphviz. I did send the email to graphviz interest group as well, but I suspect that only Rgraphviz users run into this problem because they would be the persons to be compiling an old version of graphviz rather than the latest one. ingmar
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