Question: problems with getBioC() and getBioC(develOK=TRUE) on R 2.0.0
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gravatar for Goeman, J.J. MSTAT
15.2 years ago by
Goeman, J.J. MSTAT150 wrote:
Hi, I'm trying to install Bioconductor on R 2.0.0 (windows version). I get some strange errors I first try the release version: > source("http://www.bioconductor.org/getBioC.R") > getBioC() Running getBioC version 1.2.65.... If you encounter problems, first make sure that you are running the latest version of getBioC() which can be found at: www.bioconductor.org/getBioC.R Please direct any concerns or questions to bioconductor@stat.math.ethz.ch. [1] "Installing reposTools ..." Loading required package: reposTools Error in library(package, character.only = TRUE, logical = TRUE, warn.conflicts = warn.conflicts, : 'reposTools' is not a valid package -- installed < 2.0.0? Maybe I shouldn't use the release version on 2.0.0? Then I try the developmental version: > getBioC(develOK=TRUE) Running getBioC version 1.2.65.... If you encounter problems, first make sure that you are running the latest version of getBioC() which can be found at: www.bioconductor.org/getBioC.R Please direct any concerns or questions to bioconductor@stat.math.ethz.ch. [1] "Installing reposTools ..." Loading required package: reposTools Loading required package: tools [1] "Test:" NULL Error in getBioC(develOK = TRUE) : default: targets affy, cdna and exprs. exprs: packages Biobase, annotate, genefilter, geneploter, edd, ROC, multtest, pamr vsn, and limma. affy: packages affy, affydata, annaffy, affyPLM, makecdfenv, and matchprobes plus 'exprs'. cdna: packages marray, vsn, plus 'exprs'. prog: packages graph, hexbin, externalVector. graph: packages graph, Rgraphviz, RBGL widgets: packages tkWidgets, widgetTools, DynDoc. design: packages daMA and factDesign externalData: packages externalVector and rhdf5. database: AnnBuilder, SAGElyzer, Rdbi and RdbiPgSQL. analyses: packages Biobase, ctc, daMA, edd, factDesign, genefilter, geneplotter, globaltest, gpls, limma, RMAGEML, multtest, pamr, wvalue, ROC, siggenes and splicegear. annotation: packages annotate, AnnBuilder, humanLLMappings KEGG, GO, SNPtools, makecdfenv and ontoTools. proteomics: packages gpls, PROcess and apComplex. arrayCGH: packages aCGH, DNAcopy, repeated, and rmutil. all: All of the Bio Here's my version info: > version _ platform i386-pc-mingw32 arch i386 os mingw32 system i386, mingw32 status major 2 minor 0.0 year 2004 month 10 day 04 language R What's wrong? Kind regards, Jelle Goeman http://www.math.leidenuniv.nl/~jgoeman
ADD COMMENTlink written 15.2 years ago by Goeman, J.J. MSTAT150
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