Hi, I'm trying to update my DESeq2 package. I uninstalled the old package using remove.packages("DESeq2") then install as normal using biocLite. However, it keeps installing the older version of DESeq2 1.2.10 instead of the newest version. What am I doing wrong? Please help!

Zach

You need to install the latest release version of R (currently 3.1.2) in order to get the latest version of DESeq2 or any Bioconductor package.

After installing R-3.1.2, just do

source("http://bioconductor.org/biocLite.R")
biocLite("DESeq2")

Dan

Looks like that was the issue, thank you!